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Model-Based Segmentation of the Left Atrium in CT and MRI Scans

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Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 8330))

Abstract

Ablation is a minimal invasive interventional method used in cardiac electrophysiology. It is one option for the treatment of patients suffering from paroxysmal or persistent atrial fibrillation through pulmonary vein isolation. During the intervention endocardial surface potentials from a tracked mapping catheter are recorded with respect to a static patient specific surface geometry. The purpose of the presented work is to compare two different automatic segmentation methods working on both CT and MRI volumes. Segmentation of the left atrium is challenging because the shape variability is high. The use of statistical shape models initialized by means of affine image registration was explored as first method. The second method was non-parametric and based on atlas registration and statistical region growing. Segmentation results were validated and compared using a leave-one-out cross validation on the volumes provided with segmentation results achieved manually by experts. The Dice’s coefficient was used as error measure. The method based on statistical region growing performed better than statistical shape models. A Dice’s coefficient of 0.87 was achieved on both imaging modalities.

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References

  1. Aliot, E., Ruskin, J.N.: Controversies in ablation of atrial fibrillation. European Heart Journal Supplements 10(supp. H), H32–H54 (2008)

    Google Scholar 

  2. Cootes, T.F., Edwards, G.J., Taylor, C.J.: Active appearance models. Pattern Anal. Mach. Intell. 23(6), 681–685 (2001)

    Article  Google Scholar 

  3. Cootes, T.F., Taylor, C.J., Cooper, D.H., Graham, J.: Active shape models - their training and application. Comput. Vis. Image Und. 61(1), 38–59 (1995)

    Article  Google Scholar 

  4. Depa, M., Sabuncu, M.R., Holmvang, G., Nezafat, R., Schmidt, E.J., Golland, P.: Robust Atlas-Based Segmentation of Highly Variable Anatomy: Left Atrium Segmentation. In: Camara, O., Pop, M., Rhode, K., Sermesant, M., Smith, N., Young, A. (eds.) STACOM 2010. LNCS, vol. 6364, pp. 85–94. Springer, Heidelberg (2010)

    Chapter  Google Scholar 

  5. Hassaguerre, M., Jas, P., Shah, D.C., Takahashi, A., et al.: Spontaneous initiation of atrial fibrillation by ectopic beats originating in the pulmonary veins. N. Engl. J. Med. 339(10), 659–666 (1998)

    Article  Google Scholar 

  6. Heimann, T., Meinzer, H.-P.: Statistical shape models for 3D medical image segmentation: A review. Medical Image Analysis 13(4), 543–563 (2009)

    Article  Google Scholar 

  7. John, M., Rahn, N.: Automatic left atrium segmentation by cutting the blood pool at narrowings. In: Duncan, J.S., Gerig, G. (eds.) MICCAI 2005. LNCS, vol. 3750, pp. 798–805. Springer, Heidelberg (2005)

    Chapter  Google Scholar 

  8. Kutra, D., Saalbach, A., Lehmann, H., Groth, A., Dries, S.P.M., Krueger, M.W., Dössel, O., Weese, J.: Automatic Multi-model-Based Segmentation of the Left Atrium in Cardiac MRI Scans. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012, Part II. LNCS, vol. 7511, pp. 1–8. Springer, Heidelberg (2012)

    Chapter  Google Scholar 

  9. Pieper, S., Lorensen, B., Schroeder, W., Kikinis, R.: The NA-MIC Kit: ITK, VTK, Pipelines, Grids and 3D Slicer as an Open Platform for the Medical Image Computing Community. In: Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro, vol. 1, pp. 698–701 (2006)

    Google Scholar 

  10. Prima, S., Thirion, J.-P., Subsol, G., Roberts, N.: Automatic analysis of normal brain dissymmetry of males and females in MR images. In: Wells, W.M., Colchester, A.C.F., Delp, S.L. (eds.) MICCAI 1998. LNCS, vol. 1496, pp. 770–779. Springer, Heidelberg (1998)

    Chapter  Google Scholar 

  11. Vercauteren, T., Pennec, X., Perchant, A., Ayache, N.: Diffeomorphic Demons: Efficient Non-parametric Image Registration. Neuroimage, 45(1 suppl.), S61–S72 (2009)

    Google Scholar 

  12. Zheng, Y., Wang, T., John, M., Zhou, S.K., Boese, J., Comaniciu, D.: Multi-part left atrium modeling and segmentation in C-arm CT volumes for atrial fibrillation ablation. In: Fichtinger, G., Martel, A., Peters, T. (eds.) MICCAI 2011, Part III. LNCS, vol. 6893, pp. 487–495. Springer, Heidelberg (2011)

    Chapter  Google Scholar 

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Stender, B., Blanck, O., Wang, B., Schlaefer, A. (2014). Model-Based Segmentation of the Left Atrium in CT and MRI Scans. In: Camara, O., Mansi, T., Pop, M., Rhode, K., Sermesant, M., Young, A. (eds) Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges. STACOM 2013. Lecture Notes in Computer Science, vol 8330. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-54268-8_4

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  • DOI: https://doi.org/10.1007/978-3-642-54268-8_4

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-54267-1

  • Online ISBN: 978-3-642-54268-8

  • eBook Packages: Computer ScienceComputer Science (R0)

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