Skip to main content

Automatic Vessel Segmentation and Aneurysm Detection Pipeline for Numerical Fluid Analysis

  • Conference paper
  • First Online:
Bildverarbeitung für die Medizin 2021

Part of the book series: Informatik aktuell ((INFORMAT))

  • 1616 Accesses

Abstract

Computational Fluid Dynamic calculations are a great assistance for rupture prediction of cerebral aneurysms. This procedure requires a consistent surface, as well as a separation of the blood vessel and aneurysm on this surface to calculate rupture-relevant scores. For this purpose we present an automatic pipeline, which generates a surface model of the vascular tree from angiographies determined by a markerbased watershed segmentation and label post-processing. Aneurysms on the surface model are then detected and segmented using shape-based graph cuts along with anisotropic diffusion and an iterative Support Vector Machine based classification. Aneurysms are correctly detected and segmented in 33 out of 35 test cases. Simulation relevant vessels are successfully segmented without vessel merging in 131 out of 144 test cases, achieving an average dice coefficient of 0.901.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 69.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 89.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Xiang J, Natarajan SK, Tremmel M, et al. Hemodynamic{morphologic discriminants for intracranial aneurysm rupture. Stroke. 2011;42(1):144–152.

    Google Scholar 

  2. Seo JH, Eslami P, Caplan J, et al. A highly automated computational method for modeling of intracranial aneurysm hemodynamics. Front Physiol. 2018;9:681.

    Google Scholar 

  3. Rahmany I, Laajili S, Khlifa N. Automated computerized method for the detection of unruptured cerebral aneurysms in DSA images. Curr Med Imaging. 2018;14(5):771–777.

    Google Scholar 

  4. Lawonn K, Meuschke M, Wickenhöfer R, et al. A geometric optimization approach for the detection and segmentation of multiple aneurysms. In: Computer Graphics Forum. vol. 38. Wiley Online Library; 2019. p. 413–425.

    Google Scholar 

  5. Pozo Soler J, Frangi AF, Consortium Tn. Database of cerebral artery geometries including aneurysms at the middle cerebral artery bifurcation. The University of Sheffeld; 2017.

    Google Scholar 

  6. CADA challenge dataset; 2020. Available from: https://cada.grandchallenge.org/Dataset/.

  7. Fouard C, Malandain G, Prohaska S, et al. Blockwise processing applied to brain microvascular network study. IEEE Trans Med Imaging. 2006;25(10):1319–1328.

    Google Scholar 

  8. Westin CF. Geometrical diffusion measures for MRI from tensor basis analysis. Proc ISMRM'97. 1997;.

    Google Scholar 

  9. Boykov Y, Veksler O, Zabih R. Fast approximate energy minimization via graph cuts. IEEE Trans Pattern Anal Mach Intell. 2001;23(11):1222–1239.

    Google Scholar 

  10. Koenderink JJ, Van Doorn AJ. Surface shape and curvature scales. Image Vis Comput. 1992;10(8):557–564.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Johannes Felde .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Der/die Autor(en), exklusiv lizenziert durch Springer Fachmedien Wiesbaden GmbH, ein Teil von Springer Nature

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Felde, J., Wagner, T., Lamecker, H., Doenitz, C., Gundelwein, L. (2021). Automatic Vessel Segmentation and Aneurysm Detection Pipeline for Numerical Fluid Analysis. In: Palm, C., Deserno, T.M., Handels, H., Maier, A., Maier-Hein, K., Tolxdorff, T. (eds) Bildverarbeitung für die Medizin 2021. Informatik aktuell. Springer Vieweg, Wiesbaden. https://doi.org/10.1007/978-3-658-33198-6_57

Download citation

Publish with us

Policies and ethics