Abstract
Lung parenchyma extraction is a precursor to the diagnosis and analysis of lung diseases. In this study, we propose a fully automated lung segmentation method that is able to extract lung parenchyma from both normal and pathological lung. First, we adapt the threshold algorithm to perform image binary, and then utilize the connected domain labeling method to select seed for region growing segmentation method which will be performed next. Then region growing image segmentation method is adopted and a rudimentary lung volume is established. A further refinement is performed to include the areas that might have been missed during the segmentation by an improved convex hull algorithm. We evaluated the accuracy and efficiency of the proposed method on 10 3D-CT scan sets. The results show that the improved convex hull algorithm can repair the concavities of lung contour effectively and the proposed segmentation method can extract the lung parenchyma precisely.
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Armato, S.G., McLennan, G., Bidaut, L., McNitt-Gray, M.F., Meyer, C.R., Reeves, A.P., Zhao, B., Aberle, D.R., Henschke, C.I., Hoffman, E.A., Kazerooni, E.A., MacMahon, H., Van Beeke, E.J.R., Yankelevitz, D., Biancardi, A.M., Bland, P.H., Brown, M.S., Engelmann, R.M., Laderach, G.E., Max, D., Pais, R.C., Qing, D.P.Y., Roberts, R.Y., Smith, A.R., Starkey, A., Batrah, P., Caligiuri, P., Farooqi, A., Gladish, G.W., Jude, C.M., Munden, R.F., Petkovska, I., Quint, L.E., Schwartz, L.H., Sundaram, B., Dodd, L.E., Fenimore, C., Gur, D., Petrick, N., Freymann, J., Kirby, J., Hughes, B., Casteele, A.V., Gupte, S., Sallamm, M., Heath, M.D., Kuhn, M.H., Dharaiya, E., Burns, R., Fryd, D.S., Salganicoff, M., Anand, V., Shreter, U., Vastagh, S., Croft, B.Y.: The lung image database consortium (LIDC) and image database resource initiative (IDRI): a completed reference database of lung nodules on CT scans. Med. Phys. 38(2), 915–931 (2011). https://doi.org/10.1118/1.3528204
Brown, M.S., McNitt-Gray, M.F., Mankovich, N.J., Goldin, J.G., Hiller, J., Wilson, L.S., Aberie, D.R.: Method for segmenting chest CT image data using an anatomical model: preliminary results. IEEE Trans. Med. Imaging 16(6), 828–839 (1997). https://doi.org/10.1109/42.650879
Dai, S., Lu, K., Dong, J., Zhang, Y., Chen, Y.: A novel approach of lung segmentation on chest CT images using graph cuts. Neurocomputing 168, 799–807 (2015). https://doi.org/10.1016/j.neucom.2015.05.044
De Nunzio, G., Tommasi, E., Agrusti, A., Cataldo, R., De Mitri, I., Favetta, M., Maglio, S., Massafra, A., Quarta, M., Torsello, M., Zecca, I., Bellotti, R., Tangaro, S., Calvini, P., Camarlinghi, N., Falaschi, F., Cerello, P., Oliva, P.: Automatic lung segmentation in CT images with accurate handling of the hilar region. J. Digit. Imaging 24(1), 11–27 (2011). https://doi.org/10.1007/s10278-009-9229-1
Gill, G., Beichel, R.R.: An approach for reducing the error rate in automated lung segmentation. Comput. Biol. Med. 76, 143–153 (2016). https://doi.org/10.1016/j.compbiomed.2016.06.022
Hong, R., Hu, Z., Wang, R., Wang, M., Tao, D.: Multi-view object retrieval via multi-scale topic models. IEEE Trans. Image Process. 25(12), 5814–5827 (2016). https://doi.org/10.1109/TIP.2016.2614132
Hong, R., Zhang, L., Zhang, C., Zimmermann, R.: Flickr circles: aesthetic tendency discovery by multi-view regularized topic modeling. IEEE Trans. Multimed. 18(8), 1555–1567 (2016). https://doi.org/10.1109/TMM.2016.2567071
Kemerink, G.J., Lamers, R.J.S., Pellis, B.J., Kruize, H.H., van Engelshoven, J.M.A.: On segmentation of lung parenchyma in quantitative computed tomography of the lung. Med. Phys. 25(12), 2432–2439 (1998). https://doi.org/10.1118/1.598454
Lee, W.-L., Chang, K., Hsieh, K.-S.: Unsupervised segmentation of lung fields in chest radiographs using multiresolution fractal feature vector and deformable models. Med. Biol. Eng. Comput. 54(9), 1409–1422 (2016). https://doi.org/10.1007/s11517-015-1412-6
Mansoor, A., Bagci, U., Xu, Z., Foster, B., Olivier, K.N., Elinoff, J.M., Suffredini, A.F., Udupa, J.K., Mollura, D.J.: A generic approach to pathological lung segmentation. IEEE Trans. Med. Imaging 33(12), 2293–2310 (2014). https://doi.org/10.1109/TMI.2014.2337057
McGuire, S.: World Cancer Report 2014. Geneva, Switzerland: World Health Organization, International Agency for Research on Cancer, WHO Press, 2015. Adv. Nutr. (Bethesda, Md.) 7(2), 418–419 (2016). https://doi.org/10.3945/an.116.012211
Ming, J.T.C., Noor, N.M., Rijal, O.M., Kassim, R.M., Yunus, A.: Enhanced automatic lung segmentation using graph cut for Interstitial Lung Disease. In: 2014 IEEE Conference on Biomedical Engineering and Sciences (IECBES), pp. 17–21. https://doi.org/10.1109/IECBES.2014.7047479
Nakagomi, K., Shimizu, A., Kobatake, H., Yakami, M., Fujimoto, K., Togashi, K.: Multi-shape graph cuts with neighbor prior constraints and its application to lung segmentation from a chest CT volume. Med. Image Anal. 17(1), 62–77 (2013). https://doi.org/10.1016/j.media.2012.08.002
Ngo, T.A., Carneiro, G.: Lung segmentation in chest radiographs using distance regularized level set and deep-structured learning and inference. In: 2015 IEEE International Conference on Image Processing (ICIP), pp. 2140–2143. https://doi.org/10.1109/ICIP.2015.7351179
Otsu, N.: A threshold selection method from gray-level histograms. IEEE Trans. Syst. Man Cybern. 9(1), 62–66 (1979). https://doi.org/10.1109/TSMC.1979.4310076
Zhou, H., Goldgof, D.B., Hawkins, S., Wei, L., Liu, Y., Creighton, D., Gillies, R.J., Hall, L.O., Nahavandi, S.: A robust approach for automated lung segmentation in thoracic CT. In: 2015 IEEE International Conference on Systems, Man, and Cybernetics, pp. 2267–2272. https://doi.org/10.1109/SMC.2015.396
Acknowledgments
Thanks are due to the NSFC (Grant No. U1301251, 61671426, 61471150), and Beijing National Science Foundation (No. 4141003) for funding.
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Dong, J., Lu, K., Dai, S., Xue, J., Zhai, R. (2018). Auto-Segmentation of Pathological Lung Parenchyma Based on Region Growing Method. In: Huet, B., Nie, L., Hong, R. (eds) Internet Multimedia Computing and Service. ICIMCS 2017. Communications in Computer and Information Science, vol 819. Springer, Singapore. https://doi.org/10.1007/978-981-10-8530-7_23
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DOI: https://doi.org/10.1007/978-981-10-8530-7_23
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