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Application of an automatically built 3D morphometric brain atlas: Study of cerebral ventricle shape

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Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 1131))

Abstract

In this paper we present new results on the automatic building of a 3D morphometric brain atlas from volumetric MRI images and its application to the study of the shape of cerebral structures. In particular, we show how it is possible to define “abnormal” deformations of the cerebral ventricles with a small set of parameters.

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References

  1. F. L. Bookstein. Principal Warps: Thin-Plate Splines and the Decomposition of Deformations. IEEE Transactions on Pattern Analysis and Machine Intelligence, 11 (6):567–585, June 1989.

    Article  MATH  Google Scholar 

  2. T. F. Cootes, C. J. Taylor, D. H. Cooper, and J. Graham. Active Shape Models — Their Training and Application. Computer Vision and Image Understanding, 61(1):38–59, January 1995.

    Article  Google Scholar 

  3. J. Declerck, G. Subsol, J.Ph. Thirion, and N. Ayache. Automatic retrieval of anatomical structures in 3D medical images. In N. Ayache, editor, CVRMed'95, volume 905 of Lecture Notes in Computer Science, pages 153–162, Nice (France), April 1995. Springer Verlag.

    Google Scholar 

  4. O. Monga, S. Benayoun, and O. D. Faugeras. Using Partial Derivatives of 3D Images to Extract Typical Surface Features. In CVPR, 1992.

    Google Scholar 

  5. J.F. Mangin, J. Regis, I. Bloch, V. Frouin, Y. Samson, and J. Lopez-Krahe. A MRF Based Random Graph Modelling the Human Cortical Topography. In Nicholas Ayache, editor, CVRMed'95, volume 905 of Lecture Notes in Computer Science, pages 177–183, Nice (France), April 1995. Springer-Verlag.

    Google Scholar 

  6. J. Martin, A. Pentland, and R. Kikinis. Shape Analysis of Brain Structures Using Physical and Experimental Modes. In Computer Vision and Pattern Recognition, pages 752–755, Seattle, Washington (USA), June 1994.

    Google Scholar 

  7. M. Ono, S. Kubik, and Ch. D. Abernathey. Atlas of the Cerebral Sulci. Georg Thieme Verlag, 1990.

    Google Scholar 

  8. J. Rademacher, V. S. Caviness Jr, H. Steinmetz, and A. M. Galaburda. Topographical Variation of the Human Primary Cortices: Implications for Neuroimaging, Brain Mapping, and Neurobiology. Cerebral Cortex, 3:313–329, August 1993.

    Google Scholar 

  9. G. Székely, Ch. Brechbühler, O. Kübler, R. Ogniewicz, and T. Budinger. Mapping the human cerebral cortex using 3D medial manifolds. In Richard A. Robb, editor, Visualization in Biomedical Computing, pages 130–144, Chapel Hill, North Carolina (USA), October 1992. SPIE.

    Google Scholar 

  10. G. Székely, A. Kelemen, Ch. Brechbühler, and G. Gerig. Segmentation of 3D Objects from MRI Volume Data Using Constrained Elastic Deformations of Flexible Fourier Surface Models. In N. Ayache, editor, CVRMed'95, volume 905 of Lecture Notes in Computer Science, pages 495–505, Nice (France), April 1995. Springer-Verlag.

    Google Scholar 

  11. G. Subsol, J.Ph. Thirion, and N. Ayache. A General Scheme for Automatically Building 3D Morphometric Anatomical Atlases: application to a Skull Atlas. In Medical Robotics and Computer Assisted Surgery, pages 226–233, Baltimore, Maryland (USA), November 1995.

    Google Scholar 

  12. G. Subsol. Construction automatique d'atlas anatomiques morphométriques à partir d'images médicales tridimensionnelles. PhD thesis, Ecole Centrale Paris, December 1995. In French.

    Google Scholar 

  13. J.Ph. Thirion and A. Gourdon. The Marching Lines Algorithm: new results and proofs. Technical Report 1881, INRIA, March 1993. Available by anonymous ftp at ftp.inria.fr /INRIA/tech-reports/RR.

    Google Scholar 

  14. A. W. Toga, P. Thompson, and B. A. Payne. Development Neuroimaging: Mapping the Development of Brain and Behavior, chapter Modeling Morphometric Changes of the Brain During Development. Academic Press, 1996.

    Google Scholar 

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Karl Heinz Höhne Ron Kikinis

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© 1996 Springer-Verlag Berlin Heidelberg

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Subsol, G., Thirion, JP., Ayache, N. (1996). Application of an automatically built 3D morphometric brain atlas: Study of cerebral ventricle shape. In: Höhne, K.H., Kikinis, R. (eds) Visualization in Biomedical Computing. VBC 1996. Lecture Notes in Computer Science, vol 1131. Springer, Berlin, Heidelberg. https://doi.org/10.1007/BFb0046976

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  • DOI: https://doi.org/10.1007/BFb0046976

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  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-61649-8

  • Online ISBN: 978-3-540-70739-4

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