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Partial sparse shape constrained sector-driven bladder wall segmentation

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Abstract

Bladder wall segmentation from Magnetic Resonance (MR) images plays a crucial role in clinical applications. Level set-based methods are often used to extract the bladder boundaries. When suffering from the fuzzy boundaries, it often results in confused and leaking boundaries. It has been proved that an accurate shape prior can generate an effective force to address these problems. However, the shape prior estimation for the bladder is difficult due to the complex shape variations. Moreover, how to constrain the level set is another challenge. In this paper, we first propose a partial sparse shape model to construct a robust shape prior. Specifically, the partial reliable contour is encoded by the corresponding partial shape dictionary and decoded on the complete shape dictionary to obtain a complete reliable shape prior. Second, we propose a novel sector-driven level set model for locally constraining the evolution to address the problems caused by fuzzy boundaries. Our method was validated on 167 T2 FSE MR images acquired from 15 different patients, better results were obtained compared to the state-of-the-art methods.

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References

  1. Jaume, S., Ferrant, M., Macq, B., Hoyte, L., Fielding, J., Schreyer, A., Kikinis, R., Warfield, S.: Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans. Biomed. Eng. IEEE Trans. 50(3), 383–390 (2003)

    Article  Google Scholar 

  2. Belaid, A., Boukerroui, D., Maingourd, Y., Lerallut, J.: Phase-based level set segmentation of ultrasound images. Inf. Technol. Biomed. IEEE Trans. 15(1), 138–147 (2011)

    Article  Google Scholar 

  3. Li, C., Huang, R., Ding, Z., Gatenby, J., Metaxas, D., Gore, J.: A level set method for image segmentation in the presence of intensity inhomogeneities with application to MRI. Image Process. IEEE Trans. 20(7), 2007–2016 (2011)

    Article  MathSciNet  Google Scholar 

  4. Shi, Y., Liu, Y., Wu, P.: Level set priors based approach to the segmentation of prostate ultrasound image using genetic algorithm. Intell. Autom. Soft Comput. 19(4), 537–544 (2013)

    Article  Google Scholar 

  5. Shyu, K.K., Pham, V.T., Tran, T.T., Lee, P.L.: Unsupervised active contours driven by density distance and local fitting energy with applications to medical image segmentation. Mach. Vis. Appl. 23(6), 1159–1175 (2012)

    Article  Google Scholar 

  6. Yan, P., Xu, S., Turkbey, B., Kruecker, J.: Adaptively learning local shape statistics for prostate segmentation in ultrasound. Biomed. Eng. IEEE Trans. 58(3), 633–641 (2011)

    Article  Google Scholar 

  7. Wu, P., Liu, Y., Li, Y., Shi, Y.: Trus image segmentation with non-parametric kernel density estimation shape prior. Biomed. Signal Process. Control 8(6), 764–771 (2013)

    Article  Google Scholar 

  8. Yan, P., Xu, S., Turkbey, B., Kruecker, J.: Discrete deformable model guided by partial active shape model for TRUS image segmentation. Biomed. Eng. IEEE Trans. 57(5), 1158–1166 (2010)

    Article  Google Scholar 

  9. Zhu, Y., Williams, S., Zwiggelaar, R.: A hybrid ASM approach for sparse volumetric data segmentation. Pattern Recognit. Image Anal. 17(2), 252–258 (2007)

    Article  Google Scholar 

  10. Cao, Y., Yuan, Y., Li, X., Turkbey, B., Choyke, P., Yan, P.: Segmenting images by combining selected atlases on manifold. In: Medical Image Computing and Computer-Assisted Intervention—MICCAI 2011, pp. 272–279 (2011)

  11. Klein, S., van der Heide, U., Lips, I., van Vulpen, M., Staring, M., Pluim, J.: Automatic segmentation of the prostate in 3D MR images by atlas matching using localized mutual information. Med. Phys. 35, 1407–1417 (2008)

    Article  Google Scholar 

  12. Wolz, R., Aljabar, P., Hajnal, J., Hammers, A., Rueckert, D.: LEAP: learning embeddings for atlas propagation. NeuroImage 49(2), 1316–1325 (2010)

    Article  Google Scholar 

  13. Duan, C., Liang, Z., Bao, S., Zhu, H., Wang, S., Zhang, G., Chen, J., Lu, H.: A coupled level set framework for bladder wall segmentation with application to MR Cystography. Med. Imaging IEEE Trans. 29(3), 903–915 (2010)

    Article  Google Scholar 

  14. Chan, T., Vese, L.: Active contours without edges. Image Process. IEEE Trans. 10(2), 266–277 (2001)

    Article  MATH  Google Scholar 

  15. Chi, J., Brady, M., Moore, N., Schnabel, J.: Segmentation of the bladder wall using coupled level set methods. In: Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on, pp. 1653–1656. IEEE (2011)

  16. Ma, Z., Jorge, R., Mascarenhas, T., Tavares, J.: Novel approach to segment the inner and outer boundaries of the bladder wall in T2-weighted magnetic resonance images. Ann. Biomed. Eng. 39(8), 2287–2297 (2011)

  17. Qin, X., Liu, Y., Lu, H., Li, X., Yan, P.: Coupled directional level set for MR image segmentation. In: Machine Learning and Applications (ICMLA), 2012 11th International Conference on, vol. 1, pp. 185–190. IEEE (2012)

  18. Qin, X., Li, X., Liu, Y., Lu, H., Yan, P.: Adaptive shape prior constrained level sets for bladder MR image segmentation. IEEE J. Biomed. Health Inf. 18(5), 1707–1716 (2014)

  19. Zhang, S., Zhan, Y., Dewan, M., Huang, J., Metaxas, D.N., Zhou, X.S.: Towards robust and effective shape modeling: sparse shape composition. Med. Image Anal. 16(1), 265–277 (2012)

    Article  Google Scholar 

  20. Shi, Y., Qi, F., Xue, Z., Chen, L., Ito, K., Matsuo, H., Shen, D.: Segmenting lung fields in serial chest radiographs using both population-based and patient-specific shape statistics. Med. Imaging IEEE Trans. 27(4), 481–494 (2008)

  21. Zhan, Y., Dewan, M., Zhou, X.S.: Cross modality deformable segmentation using hierarchical clustering and learning. In: Medical Image Computing and Computer-Assisted Intervention-MICCAI 2009, pp. 1033–1041. Springer, Berlin (2009)

  22. Zhang, S., Zhan, Y., Dewan, M., Huang, J., Metaxas, D.N., Zhou, X.S.: Sparse shape composition: A new framework for shape prior modeling. In: Computer Vision and Pattern Recognition (CVPR), 2011 IEEE Conference on, pp. 1025–1032. IEEE (2011)

  23. Zhang, S., Zhan, Y., Metaxas, D.N.: Deformable segmentation via sparse representation and dictionary learning. Med. Image Anal. 16(7), 1385–1396 (2012)

    Article  Google Scholar 

  24. Candes, E.J., Tao, T.: Near-optimal signal recovery from random projections: universal encoding strategies? Inf. Theory IEEE Trans. 52(12), 5406–5425 (2006)

    Article  MATH  MathSciNet  Google Scholar 

  25. Chan, T., Zhu, W.: Level set based shape prior segmentation. In: Computer Vision and Pattern Recognition (CVPR), 2005 IEEE Conference on, vol. 2, pp. 1164–1170. IEEE (2005)

  26. Cremers, D., Sochen, N., Schnörr, C.: Towards recognition-based variational segmentation using shape priors and dynamic labeling. In: Scale Space Methods in Computer Vision, pp. 388–400. Springer, Berlin (2003)

  27. Van Ginneken, B., Frangi, A.F., Staal, J.J., ter Haar Romeny, B.M., Viergever, M.A.: Active shape model segmentation with optimal features. Med. Imaging IEEE Trans. 21(8), 924–933 (2002)

    Article  Google Scholar 

  28. Davies, R.H.: Learning shape: optimal models for natural variability. PhD thesis, University of Manchester, UK (2002)

  29. Starck, J.L., Elad, M., Donoho, D.L.: Image decomposition via the combination of sparse representations and a variational approach. Image Process. IEEE Trans. 14(10), 1570–1582 (2005)

    Article  MATH  MathSciNet  Google Scholar 

  30. Goodall, C.: Procrustes methods in the statistical analysis of shape. J. R. Stat. Soc. Ser. B (Methodol.) pp. 285–339 (1991)

  31. Li, C., Xu, C., Gui, C., Fox, M.: Distance regularized level set evolution and its application to image segmentation. Image Process. IEEE Trans. 19(12), 3243–3254 (2010)

    Article  MathSciNet  Google Scholar 

Download references

Acknowledgments

This work is supported by the National Natural Science Foundation of China (Grant Nos: 61172142, 81230035 and 81071220).

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Correspondence to Pingkun Yan.

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Qin, X., Lu, H., Tian, Y. et al. Partial sparse shape constrained sector-driven bladder wall segmentation. Machine Vision and Applications 26, 593–606 (2015). https://doi.org/10.1007/s00138-015-0684-z

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