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Automatic detection of motion blur in intravital video microscopy image sequences via directional statistics of log-Gabor energy maps

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Abstract

Intravital microscopy is an important experimental tool for the study of cellular and molecular mechanisms of the leukocyte–endothelial interactions in the microcirculation of various tissues and in different inflammatory conditions of in vivo specimens. However, due to the limited control over the conditions of the image acquisition, motion blur and artifacts, resulting mainly from the heartbeat and respiratory movements of the in vivo specimen, will very often be present. This problem can significantly undermine the results of either visual or computerized analysis of the acquired video images. Since only a fraction of the total number of images are usually corrupted by severe motion blur, it is necessary to have a procedure to automatically identify such images in the video for either further restoration or removal. This paper proposes a new technique for the detection of motion blur in intravital video microscopy based on directional statistics of local energy maps computed using a bank of 2D log-Gabor filters. Quantitative assessment using both artificially corrupted images and real microscopy data were conducted to test the effectiveness of the proposed method. Results showed an area under the receiver operating characteristic curve (AUC) of 0.95 (\(\hbox {AUC}=0.95;\) 95 % CI 0.93–0.97) when tested on 329 video images visually ranked by four observers.

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References

  1. Aizenberg I, Paliy D, Zurada J, Astola J (2008) Blur identification by multilayer neural network based on multivalued neurons. IEEE Trans Neural Netw 19(5):883–898

    Article  PubMed  Google Scholar 

  2. Chandler D (2013) Seven challenges in image quality assessment: past, present, and future research. ISRN Signal Process (Article ID 905685) 1–53. doi:10.1155/2013/905685

  3. Chang C-J, abd Lin C-C (2011) Libsvm: a library for support vector machines. ACM Trans Intell Syst Technol 2(7):1–27

    Article  Google Scholar 

  4. Dakin S, Apthorp D, Alais D (2010) Anisotropies in judging the direction of moving natural scenes. J Vis 10(11):1–19

    Article  Google Scholar 

  5. de Monvel J, Calvez S, Ulfendahl M (2001) Image restoration for confocal microscopy: improving the limits of deconvolution, with application to the visualization of the mammalian hearing organ. Biophys J 80(5):2455–2470

    Article  Google Scholar 

  6. dos Santos A, Roffe E, Arantes R, Juliano L, Pesquero J, Pesquero J, Bader M, Teixeira M, Carvalho-Tavares J (2008) Kinin B2 receptor regulates chemokines CCL2 and CCL5 expression and modulates leukocyte recruitment and pathology in experimental autoimmune encephalomyelitis (EAE) in mice. J Neuroinflamm 5:49–58

    Article  Google Scholar 

  7. Fawcett T (2006) An introduction to ROC analysis. Pattern Recognit Lett 27(8):861–874

    Article  Google Scholar 

  8. Ferrari R, Hill K, Plewes D, Martel A (2008) Can bilateral asymmetry analysis of breast MR images provide additional information for detection of breast diseases?. In: Proceedings of the 2008 XXI Brazilian symposium on computer graphics and image processing, SIBGRAPI ’08, IEEE Computer Society, Washington, DC, USA, pp 113–120

  9. Ferzli R, Karam L (2009) A no-reference objective image sharpness metric based on the notion of just noticeable blur (JNB). IEEE Trans Image Process 18(4):717–728

    Article  PubMed  Google Scholar 

  10. Field D (1987) Relations between the statistics of natural images and the response properties of cortical cells. J Opt Soc Am A 4(12):2379–2394

    Article  CAS  PubMed  Google Scholar 

  11. Gabarda S, Cristóbal G (2007) Blind image quality assessment through anisotropy. J Opt Soc Am A 24(12):B42–B51

    Article  Google Scholar 

  12. Goobic A, Tang J, Acton S (2005) Image stabilization and registration for tracking cells in the microvasculature. IEEE Trans Biomed Eng 52(2):287–299

    Article  PubMed  Google Scholar 

  13. Grigorescu S, Petkov N, Kruizinga P (2002) Comparison of texture features based on Gabor filters. IEEE Trans Image Process 11(10):1160–1167

    Article  PubMed  Google Scholar 

  14. Hassen R, Wang Z, Salama M (2013) Image sharpness assessment based on local phase coherence. IEEE Trans Image Process 22(7):2798–2810

    Article  PubMed  Google Scholar 

  15. Kilarski W, Güç E, Teo J, Oliver S, Lund A, Swartz M (2013) Intravital immunofluorescence for visualizing the microcirculatory and immune microenvironments in the mouse ear dermis. PLos One 8(2):e57135. doi:10.1371/journal.pone.0057135

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  16. Kovesi P (2000) Phase congruency: a low-level image invariant. Psychol Res 64(2):136–148

    Article  CAS  PubMed  Google Scholar 

  17. Larson E, Chandler D (2010) Most apparent distortion: full-reference image quality assessment and the role of strategy. J Electron Imaging 19(1):011006-1–011006-21

    Google Scholar 

  18. Lelégard L, Brédif M, Vallet B, Boldo D (2010) Motion blur detection in aerial images shot with channel-dependent exposure. In: Photogrammetric computer vision and image analysis, vol XXXVIII—Part 3A of PCVIA10, Saint-Mandé, France, pp 180–185

  19. Lorenz K (2012) Registration and segmentation based analysis of microscopy images. Ph.D. Faculty of Perdue University, West Lafayette, Indiana

  20. Lorenz K, Salama P, Dunn K, Delp E (2012) Digital correction of motion artefacts in microscopy image sequences collected from living animals using rigid and nonrigid registration. J Microsc 245(2):148–160

    Article  CAS  PubMed  Google Scholar 

  21. Mardia K, Jupp P (2000) Directional statistics, 2nd edn. Wiley, New York

    Google Scholar 

  22. Moorthy A, Bovik A (2011) Blind image quality assessment: from natural scene statistics to perceptual quality. IEEE Trans Image Process 20(12):3350–3364

    Article  PubMed  Google Scholar 

  23. Odoardi F, Kawakami N, Klinkert W, Wekerle H, Flugel A (2007) Blood-borne soluble protein antigen intensifies T cell activation in autoimmune CNS lesions and exacerbates clinical disease. Proc Natl Acad Sci USA 104(47):18625–18630

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  24. Petkov N, Subramanian E (2008) Motion detection, noise reduction, texture suppression, and contour enhancement by spatiotemporal Gabor filters with surround inhibition. Biol Cybern 97(5–6):423–439

    Google Scholar 

  25. Ray N, Acton S, Ley K (2002) Tracking leukocytes in vivo with shape and size constrained active contours. IEEE Trans Med Imaging 21(10):1222–1235

    Article  PubMed  Google Scholar 

  26. Ray N, Acton S (2004) Motion gradient vector flow: an external force for tracking rolling leukocytes with shape and size constrained active contours. IEEE Trans Med Imaging 23(12):1466–1478

    Article  PubMed  Google Scholar 

  27. Soulet D, Paré A, Coste J, Lacroix S (2013) Automated filtering of intrinsic movement artifacts during two-photon intravital microscopy. PLos One 8(1):e53942

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  28. Viegas M, Martins T, Seco F, do Carmo A (2007) An improved and cost-effective methodology for the reduction of autofluorescence in direct immunofluorescence studies on formalin-fixed paraffin-embedded tissues. Eur J Histochem 51(1):59–66

    CAS  PubMed  Google Scholar 

  29. Vinegoni C, Lee S, Gorbatov R, Weissleder R (2012) Motion compensation using a suctioning stabilizer for intravital microscopy. IntraVital 1(2):115–121

    Article  PubMed Central  PubMed  Google Scholar 

  30. Wang Z, Bovik A, Sheikh E, Simoncelli HR (2004) Image quality assessment: from error visibility to structural similarity. IEEE Trans Image Process 13(4):600–612

    Article  PubMed  Google Scholar 

  31. Zhang N, Vladar A, Postek M, Larrabee R (2005) Spectral density-based statistical measures for image sharpness. Metrologia 42(5):351–360

    Article  Google Scholar 

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Acknowledgments

The authors are thankful to Mario Liziér, Ph.D., professor, for all very valuable comments and discussions that helped to improve this paper. The authors are also grateful to “Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)” - process 481923/2010-1 - and to “Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)” - process 2012/17772-3 - for their invaluable financial support during the course of this research.

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Correspondence to Ricardo J. Ferrari.

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Ferrari, R.J., Villa Pinto, C.H., Gregório da Silva, B.C. et al. Automatic detection of motion blur in intravital video microscopy image sequences via directional statistics of log-Gabor energy maps. Med Biol Eng Comput 53, 151–163 (2015). https://doi.org/10.1007/s11517-014-1219-x

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  • DOI: https://doi.org/10.1007/s11517-014-1219-x

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