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Computer-aided diagnosis for fetal brain ultrasound images using deep convolutional neural networks

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International Journal of Computer Assisted Radiology and Surgery Aims and scope Submit manuscript

Abstract

Purpose

Fetal brain abnormalities are some of the most common congenital malformations that may associated with syndromic and chromosomal malformations, and could lead to neurodevelopmental delay and mental retardation. Early prenatal detection of brain abnormalities is essential for informing clinical management pathways and consulting for parents. The purpose of this research is to develop computer-aided diagnosis algorithms for five common fetal brain abnormalities, which may provide assistance to doctors for brain abnormalities detection in antenatal neurosonographic assessment.

Methods

We applied a classifier to classify images of fetal brain standard planes (transventricular and transcerebellar) as normal or abnormal. The classifier was trained by image-level labeled images. In the first step, craniocerebral regions were segmented from the ultrasound images. Then, these segmentations were classified into four categories. Last, the lesions in the abnormal images were localized by class activation mapping.

Results

We evaluated our algorithms on real-world clinical datasets of fetal brain ultrasound images. We observed that the proposed method achieved a Dice score of 0.942 on craniocerebral region segmentation, an average F1-score of 0.96 on classification and an average mean IOU of 0.497 on lesion localization.

Conclusion

We present computer-aided diagnosis algorithms for fetal brain ultrasound images based on deep convolutional neural networks. Our algorithms could be potentially applied in diagnosis assistance and are expected to help junior doctors in making clinical decision and reducing false negatives of fetal brain abnormalities.

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References

  1. International Society of Ultrasound in Obstetrics & Gynecology Education Committee (2007) Sonographic examination of the fetal central nervous system: guidelines for performing the ’basic examination’ and the ’fetal neurosonogram’. Ultrasound Obstet Gynecol 29(1):109–116. https://doi.org/10.1002/uog.3909

    Article  Google Scholar 

  2. Filly RA, Cardoza JD, Goldstein RB, Barkovich AJ (1989) Detection of fetal central nervous system anomalies: a practical level of effort for a routine sonogram. Radiology 172(2):403–408. https://doi.org/10.1148/radiology.172.2.2664864

    Article  CAS  PubMed  Google Scholar 

  3. Baumgartner CF, Kamnitsas K, Matthew J, Fletcher TP, Smith S, Koch LM, Kainz B, Rueckert D (2017) Sononet: real-time detection and localisation of fetal standard scan planes in freehand ultrasound. IEEE Trans Med Imaging 36(11):2204–2215. https://doi.org/10.1109/TMI.2017.2712367

    Article  PubMed  Google Scholar 

  4. Salomon LJ, Alfirevic Z, Berghella V, Bilardo C, Hernandez-Andrade E, Johnsen SL, Kalache K, L K-Y, Malinger G, Munoz H (2011) Practice guidelines for performance of the routine mid-trimester fetal ultrasound scan. Ultrasound Obstet Gynecol 37:116–126. https://doi.org/10.1002/uog.8831

    Article  CAS  PubMed  Google Scholar 

  5. Yu Z, Tan EL, Ni D, Qin J, Chen S, Li S, Lei B, Wang T (2018) A deep convolutional neural network-based framework for automatic fetal facial standard plane recognition. IEEE J Biomed Health Inform 22(3):874–885. https://doi.org/10.1109/JBHI.2017.2705031

    Article  PubMed  Google Scholar 

  6. Yaqub M, Kelly B, Papageorghiou AT, Noble JA (2017) A deep learning solution for automatic fetal neurosonographic diagnostic plane verification using clinical standard constraints. Ultrasound Med Biol 43(12):2925–2933. https://doi.org/10.1016/j.ultrasmedbio.2017.07.013

    Article  PubMed  Google Scholar 

  7. Hao C, Dou Q, Ni D, Cheng JZ, Qin J, Li S, Heng PA (2015) Automatic fetal ultrasound standard plane detection using knowledge transferred recurrent neural networks. In: International conference on medical image computing and computer-assisted intervention. https://doi.org/10.1007/978-3-319-24553-9_62

  8. Chen H, Wu L, Dou Q, Qin J, Li S, Cheng JZ, Ni D, Heng PA (2017) Ultrasound standard plane detection using a composite neural network framework. IEEE Trans Cybern 47(6):1576–1586. https://doi.org/10.1109/TCYB.2017.2685080

    Article  PubMed  Google Scholar 

  9. Zhang L, Chen S, Chin CT, Wang T, Li S (2012) Intelligent scanning: automated standard plane selection and biometric measurement of early gestational sac in routine ultrasound examination. Med Phys 39(8):5015–5027. https://doi.org/10.1118/1.4736415

    Article  PubMed  Google Scholar 

  10. Ni D, Yang X, Chen X, Chin CT, Chen S, Heng PA, Li S, Qin J, Wang T (2014) Standard plane localization in ultrasound by radial component model and selective search. Ultrasound Med Biol 40(11):2728–2742. https://doi.org/10.1016/j.ultrasmedbio.2014.06.006

    Article  PubMed  Google Scholar 

  11. Simonyan K, Zisserman A (2014) Very deep convolutional networks for large-scale image recognition. arXiv:1409.1556

  12. Zhang L, Dudley NJ, Lambrou T, Allinson N, Ye X (2017) Automatic image quality assessment and measurement of fetal head in two-dimensional ultrasound image. J Med Imaging 4(2):024001. https://doi.org/10.1117/1.JMI.4.2.024001

    Article  Google Scholar 

  13. Lu W, Tan J, Floyd R (2005) Automated fetal head detection and measurement in ultrasound images by iterative randomized Hough transform. Ultrasound Med Biol 31(7):929–936. https://doi.org/10.1016/j.ultrasmedbio.2005.04.002

    Article  PubMed  Google Scholar 

  14. Jardim SMGVB, Figueiredo MAT (2005) Segmentation of fetal ultrasound images. Ultrasound Med Biol 31(2):243–250. https://doi.org/10.1016/j.ultrasmedbio.2004.11.003

    Article  PubMed  Google Scholar 

  15. Zhang L, Ye X, Lambrou T, Duan W, Allinson N, Dudley NJ (2016) A supervised texton based approach for automatic segmentation and measurement of the fetal head and femur in 2D ultrasound images. Phys Med Biol 61(3):1095–1115. https://doi.org/10.1088/0031-9155/61/3/1095

    Article  PubMed  Google Scholar 

  16. Yaqub M, Kelly B, Papageorghiou AT, Noble JA (2015) Guided random forests for identification of key fetal anatomy and image categorization in ultrasound scans. In: International conference on medical image computing and computer-assisted intervention. https://doi.org/10.1007/978-3-319-24574-4_82

  17. Anto EA, Amoah B, Crimi A (2015) Segmentation of ultrasound images of fetal anatomic structures using random forest for low-cost settings. In: Engineering in medicine and biology society. https://doi.org/10.1109/EMBC.2015.7318481

  18. Namburete AIL, Noble JA (2013) Fetal cranial segmentation in 2D ultrasound images using shape properties of pixel clusters. In: IEEE International symposium on biomedical imaging. https://doi.org/10.1109/ISBI.2013.6556576

  19. van den Heuvel P, Hezkiel S, Stefano dK, Chris L, Bram vG (2019) Automated fetal head detection and circumference estimation from free-hand ultrasound sweeps using deep learning in resource-limited countries. Ultrasound Med Biol 45(3):773–785. https://doi.org/10.1016/j.ultrasmedbio.2018.09.015

    Article  PubMed  Google Scholar 

  20. Ronneberger O, Fischer P, Brox T (2015) U-net: convolutional networks for biomedical image segmentation. In: International conference on medical image computing and computer-assisted intervention. https://doi.org/10.1007/978-3-319-24574-4_28

  21. Selvaraju RR, Cogswell M, Das A, Vedantam R, Parikh D, Batra D (2017) Grad-cam: visual explanations from deep networks via gradient-based localization. In: IEEE international conference on computer vision. https://doi.org/10.1109/ICCV.2017.74

  22. Hoiem D, Chodpathumwan Y, Dai Q (2012) Diagnosing error in object detectors. In: European conference on computer visions. https://doi.org/10.1007/978-3-642-33712-3_25

  23. Johns E, Aodha OM, Brostow GJ (2015) Becoming the expert interactive multi-class machine teaching. In: IEEE conference on computer vision and pattern recognition. https://doi.org/10.1109/CVPR.2015.7298877

  24. Zhou B, Khosla A, Lapedriza A, Oliva A, Torralba A (2015) Learning deep features for discriminative localization. In: IEEE conference on computer vision and pattern recognition. https://doi.org/10.1109/CVPR.2016.319

  25. Xie H, Wang N, He M, Zhang L, Cai H, Xian J, Lin M, Zheng J, Yang Y (2020) Using deep learning algorithms to classify fetal brain ultrasound images as normal or abnormal. Ultrasound Obstet Gynecol. https://doi.org/10.1002/uog.21967

    Article  PubMed  PubMed Central  Google Scholar 

  26. Krizhevsky A, Sutskever I, Hinton GE (2012) Imagenet classification with deep convolutional neural networks. Int Conf Neural Inf Process Syst 2:1097–1105. https://doi.org/10.1145/3065386

    Article  Google Scholar 

  27. He H, Garcia E (2009) Learning from imbalanced data. IEEE Trans Knowl Data Eng 21(9):1263–1284. https://doi.org/10.1109/tkde.2008.239

    Article  Google Scholar 

  28. Oquab M, Bottou L, Laptev I, Sivic J (2014) Learning and transferring mid-level image representations using convolutional neural networks. In: Computer vision and pattern recognition. https://doi.org/10.1109/CVPR.2014.222

  29. Yosinski J, Clune J, Bengio Y, Lipson H (2014) How transferable are features in deep neural networks? Adv Neural Inf Process Syst 27. arXiv:1411.1792

  30. Chen H, Ni D, Qin J, Li S, Yang X, Wang T, Heng PA (2015) Standard plane localization in fetal ultrasound via domain transferred deep neural networks. IEEE J Biomed Health Inform 19(5):1627–1636. https://doi.org/10.1109/JBHI.2015.2425041

    Article  PubMed  Google Scholar 

  31. Tajbakhsh N, Shin JY, Gurudu SR, Hurst RT, Kendall CB, Gotway MB, Liang J (2016) Convolutional neural networks for medical image analysis: full training or fine tuning? IEEE Trans Med Imaging 35(5):1299–1312. https://doi.org/10.1109/TMI.2016.2535302

    Article  PubMed  Google Scholar 

  32. Ren S, He K, Girshick R, Sun J (2016) Faster R-CNN: towards real-time object detection with region proposal networks. IEEE Trans Pattern Anal Mach Intell 39:1137–1149. https://doi.org/10.1109/TPAMI.2016.2577031

    Article  PubMed  Google Scholar 

  33. Redmon J, Farhadi A (2017) YOLO9000: better, faster, stronger. In: IEEE conference on computer vision and pattern recognition. https://doi.org/10.1109/CVPR.2017.690

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Funding

This study was funded by the National Natural Science Foundation of China (Grant Nos. 81571687 and 61771007), the Science and Technology Development Plan of Guangdong Province (Grant Nos. 2017A020214013 and 2020B010166002) and the Health and Medical Collaborative Innovation Project of Guangzhou City (Grant Number 201803010021).

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Correspondence to Hongning Xie.

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All procedures performed in studies involving human participants were in accordance with the ethical standards of the institutional and/or national research committee and with the 1964 Helsinki Declaration and its later amendments or comparable ethical standards.

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The study protocol was approved by the Institutional Review Board of the First Affiliated Hospital of Sun Yat-sen University.

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Xie, B., Lei, T., Wang, N. et al. Computer-aided diagnosis for fetal brain ultrasound images using deep convolutional neural networks. Int J CARS 15, 1303–1312 (2020). https://doi.org/10.1007/s11548-020-02182-3

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  • DOI: https://doi.org/10.1007/s11548-020-02182-3

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