Abstract
Purpose
Micropapillary adenocarcinoma is a distinctive histological subtype of lung adenocarcinoma with poor prognosis. Computer-aided diagnosis method has the potential to provide help for its early diagnosis. But the implementation of the existing methods largely relies on massive manually labeled data and consumes a lot of time and energy. To tackle these problems, we propose a framework that applies semi-supervised learning method to detect micropapillary adenocarcinoma, which aims to utilize labeled and unlabeled data better.
Methods
The framework consists of a teacher model and a student model. The teacher model is first obtained by using the labeled data. Then, it makes predictions on unlabeled data as pseudo-labels for students. Finally, high-quality pseudo-labels are selected and associated with the labeled data to train the student model. During the learning process of the student model, augmentation is added so that the student model generalizes better than the teacher model.
Results
Experiments are conducted on our own whole slide micropapillary lung adenocarcinoma histopathology image dataset and we selected 3527 patches for the experiment. In the supervised learning, our detector achieves a precision of 0.762 and recall of 0.884. In the semi-supervised learning, our method achieves a precision of 0.775 and recall of 0.896; it is superior to other methods.
Conclusion
We proposed a semi-supervised learning framework for micropapillary adenocarcinoma detection, which has better performance in utilizing both labeled and unlabeled data. In addition, the detector we designed improves the detection accuracy and speed and achieves promising results in detecting micropapillary adenocarcinoma.
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References
Yoshizawa A, Sumiyoshi S, Sonobe M, Kobayashi M, Fujimoto M, Kawakami F, Tsuruyama T, Travis WD, Date H, Haga H (2013) Validation of the iaslc/ats/ers lung adenocarcinoma classification for prognosis and association with egfr and kras gene mutations: analysis of 440 Japanese patients. J Thorac Oncol 8(1):52–61
Kamiya K, Hayashi Y, Douguchi J, Hashiguchi A, Yamada T, Izumi Y, Watanabe M, Kawamura M, Horinouchi H, Shimada N, Kobayashi K, Sakamoto M (2008) Histopathological features and prognostic significance of the micropapillary pattern in lung adenocarcinoma. Modern Pathol 21(8):992–1001
Travis WD, Brambilla E, Noguchi M, Nicholson AG, Geisinger KR, Yatabe Y, Beer DG, Powell CA, Riely GJ, Van Schil PE, Garg K, Austin HMJ, Asamura H, Rusch WV, Hirsch FR, Scagliotti G, Mitsudomi T, Huber MR, Ishikawa Y, Jett J, Sanchez Cespedes M, Sculier JP, Takahashi T, Tsuboi M, Vansteenkiste J, Wistuba I, Yang PC, Aberle D, Brambilla C, Flieder D, Franklin W, Gazdar A, Gould M, Hasleton P, Henderson D, Johnson B, Johnson D, Kerr K, Kuriyama K, Soo Lee J, Miller V, Petersen I, Roggli V, Rosell R, Saijo N, Thunnissen E, Tsao M, Yankelewitz D (2011) International association for the study of lung cancer/american thoracic society/European respiratory society international multidisciplinary classification of lung adenocarcinoma. J Thorac Oncol 6(2):244–285
Bast Jr RC, Holland JF (2010) Holland Frei Cancer Medicine 8 PMPH-USA
Maeda R, Isowa N, Onuma H, Miura H, Harada T, Touge H, Tokuyasu H, Kawasaki Y (2009) Lung adenocarcinomas with micropapillary components. Gen Thorac Cardiovasc Surg 57(10):534–539
Yang J, Geng C, Wang H, Ji J, Dai Y (2019) Classification on histological subtypes of lung adenocarcinoma from low-resolution CT images based on densenet. J ZheJiang Univ (Eng Sci) 53(6):1164–1170
Makimoto Y, Nabeshima K, Iwasaki H, Miyoshi T, Enatsu S, Shiraishi T, Iwasaki A, Shirakusa T, Kikuchi M (2005) Micropapillary pattern: a distinct pathological marker to subclassify tumours with a significantly poor prognosis within small peripheral lung adenocarcinoma (\(\le 20 mm\)) with mixed bronchioloalveolar and invasive subtypes (Noguchi’s type C tumours). Histopathology 46(6):677–684
Teramoto A, Tsukamoto T, Kiriyama Y, Fujita H (2017) Automated classification of lung cancer types from cytological images using deep convolutional neural networks. BioMed research international 2017
Zhu X, Goldberg AB (2009) Introduction to semi-supervised learning. Synth Lect Artific Intell Mach Learn 3(1):1–130
Wu K, Yap K (2006) Fuzzy SVM for content-based image retrieval: a pseudo-label support vector machine framework. IEEE Comput Intell Mag 1(2):10–16
Lee D (2013) Pseudo-label: the simple and efficient semi-supervised learning method for deep neural networks In: Workshop on challenges in representation learning (ICML) p 896
Xu X, Li W, Xu D, Tsang IW (2015) Co-labeling for multi-view weakly labeled learning. IEEE Transactions Pattern Anal Mach Intell 38(6):1113–1125
Ba LJ, Caruana R (2013) Do deep nets really need to be deep? arXiv preprint arXiv:1312.6184
Wang X, Chen H, Gan C, Lin H, Dou Q, Tsougenis E, Huang Q, Cai M, Heng P (2019) Weakly supervised deep learning for whole slide lung cancer image analysis. IEEE Transactions Cybern 50(9):3950–3962
Liu Y, Gadepalli K, Norouzi M, Dahl GE, Kohlberger T, Boyko A, Venugopalan S, Timofeev A, Nelson PQ, Corrado GS, Jason D H, Peng L, Stumpe MC (2017) Detecting cancer metastases on gigapixel pathology images arXiv preprint arXiv:170302442
Gong J, Liu J, Hao W, Nie S, Zheng B, Wang S, Peng W (2020) A deep residual learning network for predicting lung adenocarcinoma manifesting as ground-glass nodule on ct images. Eur Radiol 30(4):1847–1855
Wei JW, Tafe LJ, Linnik YA, Vaickus LJ, Tomita N, Hassanpour S (2019) Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks. Scientific Rep 9(1):1–8
Yan J, Shi F, Zhao M, Wang Z, Yang Y, Chen S (2019) Confocal raman sensing based on a support vector machine for detecting lung adenocarcinoma cells. IEEE Sensors J 19(21):9624–9633
Yang H, Deng R, Lu Y, Zhu Z, Chen Y, Roland JT, Lu L, Landman BA, Fogo AB, Huo Y (2020) Circlenet: anchor-free detection with circle representation arXiv preprint arXiv:200602474
Duan K, Bai S, Xie L, Qi H, Huang Q, Tian Q (2019) Centernet: keypoint triplets for object detection In: Proceedings of the IEEE/CVF International Conference on Computer Vision pp 6569–6578
Redmon J, Divvala S, Girshick R, Farhadi A (2016) You only look once: unified, real-time object detection In: Proceedings of the IEEE conference on computer vision and pattern recognition pp 779–788
Xie Q, Luong M, Hovy E, Le QV (2020) Self-training with noisy student improves imagenet classification In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition pp 10687–10698
Bulten W, Pinckaers H, van Boven H, Vink R, de Bel T, van Ginneken B, van der Laak J, Hulsbergen-van de Kaa C, Litjens G (2020) Automated deep-learning system for Gleason grading of prostate cancer using biopsies: a diagnostic study. Lancet Oncol 21(2):233–241
Tolkach Y, Dohmgörgen T, Toma M, Kristiansen G (2020) High-accuracy prostate cancer pathology using deep learning. Nat Mach Intell 2(7):411–418
Marini N, Otálora S, Müller H, Atzori M (2021) Semi-supervised training of deep convolutional neural networks with heterogeneous data and few local annotations: An experiment on prostate histopathology image classification. Med Image Anal 73:102165
Shaw S, Pajak M, Lisowska A, Tsaftaris SA, O’Neil AQ (2020) Teacher-student chain for efficient semi-supervised histology image classification arXiv preprint arXiv:200308797
Gao J, Wang J, Dai S, Li LJ, Nevatia R (2019) Note-rcnn: noise tolerant ensemble rcnn for semi-supervised object detection In: Proceedings of the IEEE/CVF International Conference on Computer Vision, pp 9508–9517
Li J, Yang S, Huang X, Da Q, Yang X, Hu Z, Duan Q, Wang C, Li H (2019) Signet ring cell detection with a semi-supervised learning framework In: International Conference on Information Processing in Medical Imaging pp 842–854
Jocher G, Stoken A, Borovec J, Changyu L, Hogan A, Rai P (2020) ultralytics/yolov5: v3.1-Bug fixes and performance improvements
Wang C, Liao HM, Wu Y, Chen P, Hsieh J, Yeh I (2020) CSPNet: a new backbone that can enhance learning capability of cnn In: Proceedings of the IEEE/CVF conference on computer vision and pattern recognition workshops pp 390–391
Lin T, Dollár P, Girshick R, He K, Hariharan B, Belongie S (2017) Feature pyramid networks for object detection In: Proceedings of the IEEE conference on computer vision and pattern recognition, pp 2117–2125
Zheng Z, Wang P, Ren D, Liu W, Ye R, Hu Q, Zuo W (2020) Enhancing geometric factors in model learning and inference for object detection and instance segmentation arXiv preprint arXiv:200503572
Rahman MA, Wang Y (2016) Optimizing intersection-over-union in deep neural networks for image segmentation In: International symposium on visual computing pp 234–244
Zheng Z, Wang P, Liu W, Li J, Ye R, Ren D (2020) Distance-IoU loss: Faster and better learning for bounding box regression Proceedings of the AAAI Conference on Artificial Intelligence 07:12993–13000
Redmon J, Farhadi A (2017) YOLO9000: better, faster, stronger In: Proceedings of the IEEE conference on computer vision and pattern recognition pp 7263–7271
Neubeck A, Van Gool L (2006) Efficient non-maximum suppression In: 18th International Conference on Pattern Recognition (ICPR’06) pp 850–855
Radosavovic I, Dollár P, Girshick R, Gkioxari G, He K (2018) Data distillation: towards omni-supervised learning In: Proceedings of the IEEE conference on computer vision and pattern recognition pp 4119–4128
Yun S, Han D, Oh SJ, Chun S, Choe J, Yoo Y (2019) Cutmix: regularization strategy to train strong classifiers with localizable features In: Proceedings of the IEEE/CVF International Conference on Computer Vision pp 6023–6032
Xu P, Shi S, Chu X (2017) Performance evaluation of deep learning tools in docker containers In: 2017 3rd International Conference on Big Data Computing and Communications (BIGCOM) pp 395–403
Paszke A, Gross S, Massa F, Lerer A, Bradbury J, Chanan G, Killeen T, Lin Z, Gimelshein N, Antiga L, Desmaison A, Kopf A, Yang E, DeVito Z, Raison M, Tejani A, Chilamkurthy S, Steiner B, Fang L, Bai J, Chintala S (2019) Pytorch: an imperative style, high-performance deep learning library. Adv Neural Information Process Syst 32:8026–8037
Loshchilov I, Hutter F (2016) Sgdr: stochastic gradient descent with warm restarts arXiv preprint arXiv:160803983
Tajbakhsh N, Shin JY, Gurudu SR, Hurst RT, Kendall CB, Gotway MB, Liang J (2016) Convolutional neural networks for medical image analysis: full training or fine tuning? IEEE Transactions Med Imag 35(5):1299–1312
Graham S, Epstein D, Rajpoot N (2020) Dense steerable filter cnns for exploiting rotational symmetry in histology images. IEEE Transactions Med Imag 39(12):4124–4136
Rezatofighi H, Tsoi N, Gwak J, Sadeghian A, Reid I, Savarese S (2019) Generalized intersection over union: a metric and a loss for bounding box regression In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition pp 658–666
Ning C, Zhou H, Song Y, Tang J (2017) Inception single shot multibox detector for object detection In: 2017 IEEE International Conference on Multimedia & Expo Workshops (ICMEW) pp 549–554
Ren S, He K, Girshick R, Sun J (2016) Faster R-CNN: towards real-time object detection with region proposal networks. IEEE Transactions Pattern Anal Mach Intell 39(6):1137–1149
Liu W, Anguelov D, Erhan D, Szegedy C, Reed S, Fu C, Berg AC (2016) SSD: single shot multibox detector In: European conference on computer vision pp 21–37
Redmon J, Farhadi A (2018) YOLOv3:An incremental improvement arXiv preprint arXiv:180402767
Funding
This study was funded by the Primary Research & Development Plan of Shandong Province (No.2017GGX10112), the Natural Science Foundation of Shandong Province (ZR2020MF051), National Natural Science Foundation of China (NO.81871508, NO.61773246,NO.61572300).
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Gao, Y., Ding, Y., Xiao, W. et al. A semi-supervised learning framework for micropapillary adenocarcinoma detection. Int J CARS 17, 639–648 (2022). https://doi.org/10.1007/s11548-022-02565-8
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DOI: https://doi.org/10.1007/s11548-022-02565-8