Skip to main content
Log in

Wavelet K-Means Clustering and Fuzzy-Based Method for Segmenting MRI Images Depicting Parkinson’s Disease

  • Published:
International Journal of Fuzzy Systems Aims and scope Submit manuscript

Abstract

The early diagnosis of Parkinson’s disease (PD) is important to reduce deaths due to this disease. Images of patients with PD obtained through magnetic resonance imaging (MRI) show gray matter, white matter, and cerebrospinal fluids; images of these components provide physicians with important information to determine the severity of the disease. Therefore, methods for segmenting these regions in images have been employed. However, difficulties have been encountered in the segmentation of the PD MRI images owing to the unclear boundaries between the gray matter and white matter and the regions being contained in homogeneous and unclear structures. Therefore, we propose a hybrid wavelet k-means clustering (KMC) and fuzzy median filter (FMF) method. First, detailed information from the MRI images was extracted using discrete wavelet transform; these images were enhanced by increasing the pixel values. The enhanced images were then fed into the KMC model for segmentation. Finally, the segmented images were input into the FMF for removing uncertainty and noise. This method can also be used for segmenting the MRI images of other diseases such as tuberous sclerosis (TBS) and atrial fibrillation (AF). The results of a qualitative and quantitative evaluation conducted using an open-source benchmark dataset and a clinical dataset were presented. The peak signal-to-noise ratio, structural similarity, and mean-squared error were used to compare the efficiency of the proposed method with that of other segmentation methods. The results proved that the proposed method can assist in the early detection of PD, TBS, and AF from MRI.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Source images, b ground truth, and segmented images using the c Otsu method, d FCM, e KMC, f PNN, g neutrosophic, h deep learning, and i proposed method

Fig. 7

Source images, b ground truth, and segmented images using the c Otsu method, d FCM, e KMC, f PNN, g neutrosophic, h deep learning, and i proposed method

Similar content being viewed by others

References

  1. Hong, J., Park, B.Y., Lee, M.J., Chung, C.S., Cha, J., Park, H.: Two-step deep neural network for segmentation of deep white matter hyper intensities in migraineurs. Comput. Methods Progr. Biomed. 183(105065), 1–9 (2020)

    Google Scholar 

  2. Jin, X., Chen, G., Hou, J., Jiang, Q., Zhou, D., Yao, S.: Multimodal sensor medical image fusion based on nonsubsampled shearlet transform and S-PCNNs in HSV space. Signal Process. 153, 379–395 (2018)

    Article  Google Scholar 

  3. Yi, J., Wu, P., Jiang, M., Huang, Q., Hoeppner, D.J., Metaxas, D.N.: Attentive neural cell instance segmentation. Med. Image Anal. 55, 228–240 (2019)

    Article  Google Scholar 

  4. Drozdzal, M., Chartrand, G., Vorontsov, E., Shakeri, M., Di Jorio, L., Tang, A., Romero, A., Bengio, Y., Pal, C., Kadoury, S.: Learning normalized inputs for iterative estimation in medical image segmentation. Med. Image Anal. 44, 1–3 (2018)

    Article  Google Scholar 

  5. Harris, G.J., Barta, P.E., Peng, L.W., Lee, S., Brettschneider, P.D., Shah, A., Henderer, J.D., Schlaepfer, T.E., Pearlson, G.D.: MR volume segmentation of gray matter and white matter using manual thresholding: dependence on image brightness. Am. J. Neuroradiol. 15(2), 225–230 (1994)

    Google Scholar 

  6. Portela, N.M., Cavalcanti, G.D., Ren, T.I.: Semi-supervised clustering for MR brain image segmentation. Expert Syst. Appl. 41(4), 1492–1497 (2014)

    Article  Google Scholar 

  7. Menze, B.H., Jakab, A., Bauer, S., Kalpathy-Cramer, J., Farahani, K., Kirby, J., Burren, Y., Porz, N., Slotboom, J., Wiest, R., Lanczi, L.: The multimodal brain tumor image segmentation benchmark (BRATS). IEEE Trans. Med. Imaging 34(10), 1993–2024 (2014)

    Article  Google Scholar 

  8. Xu, R., Wunsch, D.: Survey of clustering algorithms. IEEE Trans. Neural Netw. 16(3), 645–678 (2005)

    Article  Google Scholar 

  9. Jain, A.K.: Data clustering: 50 years beyond K-means. Pattern Recogn. Lett. 31(8), 651–666 (2010)

    Article  Google Scholar 

  10. Moftah, H.M., Azar, A.T., Al-Shammari, E.T., Ghali, N.I., Hassanien, A.E., Shoman, M.: Adaptive k-means clustering algorithm for MR breast image segmentation. Neural Comput. Appl. 24(7–8), 1917–1928 (2014)

    Article  Google Scholar 

  11. Huang, Y.-P., Singh, P., Kuo, H.-C.: A hybrid fuzzy clustering approach for the recognition and visualization of MRI images of Parkinson’s disease. IEEE Access 8(1), 25041–25051 (2020)

    Article  Google Scholar 

  12. Mangan, A.P., Whitaker, R.T.: Partitioning 3D surface meshes using watershed segmentation. IEEE Trans. Vis. Comput. Graph. 5(4), 308–321 (1999)

    Article  Google Scholar 

  13. Otsu, N.: A threshold selection method from gray-level histograms. IEEE Trans. Syst. Man Cybern 9(1), 62–66 (1979)

    Article  MathSciNet  Google Scholar 

  14. Wu, H.S., Barba, J., Gil, J.: Iterative thresholding for segmentation of cells from noisy images. J. Microsc. 197(3), 296–304 (2000)

    Article  Google Scholar 

  15. Chan, F.H., Lam, F.K., Zhu, H.: Adaptive thresholding by variational method. IEEE Trans. Image Process. 7(3), 468–473 (1998)

    Article  Google Scholar 

  16. Mallat, S.G.: A theory for multiresolution signal decomposition: the wavelet representation. IEEE Trans. Pattern Anal. Mach. Intell. 11(7), 674–693 (1989)

    Article  Google Scholar 

  17. Zhang, J., Liu, Q., Chen, Z.: A medical image segmentation method based on SOM and wavelet transforms. J. Commun. Comput. 2(5), 46–50 (2005)

    Google Scholar 

  18. Shree, N.V., Kumar, T.N.: Identification and classification of brain tumor MRI images with feature extraction using DWT and probabilistic neural network. Brain Inform. 5(1), 23–30 (2018)

    Article  Google Scholar 

  19. Mohsen, H., El-Dahshan, E.S., El-Horbaty, E.S., Salem, A.B.: Classification using deep learning neural networks for brain tumors. Fut. Comput. Inform. J. 3(1), 68–71 (2018)

    Article  Google Scholar 

  20. Harati, V., Khayati, R., Farzan, A.: Fully automated tumor segmentation based on improved fuzzy connectedness algorithm in brain MR images. Comput. Biol. Med. 41(7), 483–492 (2011)

    Article  Google Scholar 

  21. Ren, T., Wang, H., Feng, H., Xu, C., Liu, G., Ding, P.: Study on the improved fuzzy clustering algorithm and its application in brain image segmentation. Appl. Soft Comput. 81(105503), 1–9 (2019)

    Google Scholar 

  22. Huang, Y.-P., Zaza, S., Chu, W.-J., Krikorian, R., Sandnes, F.E.: Using fuzzy systems to infer memory impairment from MRI. Int. J. Fuzzy Syst. 20(3), 913–927 (2018)

    Article  Google Scholar 

  23. Huang, Y.-P., Basanta, H., Kang, E.Y.-C., Chen, K.-J., Hwang, Y.-S., Lai, C.-C., Cambell, J.P., Chiang, M.F., Chen, R.V. P., Kusaka, S., Fukushima, Y., Wu, W.-C.: Automated detection of ROP early stages using deep convolution neural network. Br. J. Ophthalmol. 1–5 (2020)

  24. Huang, Y.-P., Vadloori, S., Chu, H.-C., Kang, E.Y.-C., Wu, W.-C., Kusaka, S., Fukushima, Y.: Deep learning models for automated diagnosis of retinopathy of prematurity in preterm infants. Electronics 1444, 1–16 (2020)

    Google Scholar 

  25. Huang, Y.-P., Basanta, H.: Bird image retrieval and recognition using a deep learning platform. IEEE Access 7(1), 66980–66989 (2019)

    Article  Google Scholar 

  26. Jha, D., Riegler, M.A., Johansen, D., Halvorsen, P., Johansen, H.D.: DoubleU-Net: a deep convolutional neural network for medical image segmentation. arXiv preprint arXiv:2006.04868, Jun 2020

  27. Lundervold, A.S., Lundervold, A.: An overview of deep learning in medical imaging focusing on MRI. Zeitschrift für Medizinische Physik 9(2), 102–127 (2019)

    Article  Google Scholar 

  28. https://ida.loni.usc.edu/login.jsp. Accessed 15 Aug 2020

  29. Wang, Z., Bovik, A.C., Sheikh, H.R., Simoncelli, E.P.: Image quality assessment: from error visibility to structural similarity. IEEE Trans. Image Process. 13(4), 600–612 (2004)

    Article  Google Scholar 

  30. Rai, H.M., Chatterjee, K.: Hybrid adaptive algorithm based on wavelet transform and independent component analysis for denoising of MRI images. Measurement 144, 72–82 (2019)

    Article  Google Scholar 

  31. Hartigan, J.A.: Clustering Algorithms. Wiley, New York (1975)

    MATH  Google Scholar 

  32. Ng, H.P., Ong, S.H., Foong, K.W., Goh, P.S., Nowinski, W.L.: Medical image segmentation using k-means clustering and improved watershed algorithm. In: Proc. of IEEE Southwest Symp. on Image Analysis and Interpretation, Denver, CO, USA, pp.61–65, (2006)

  33. Vijay, J., Subhashini, J.: An efficient brain tumor detection methodology using K-means clustering algorithm. In: Proc. of Int. Conf. on Communication and Signal Processing, Melmaruvathur, India, pp.653–657 (2013)

  34. Jiang, Q., Jin, X., Lee, S.J., Yao, S.: A novel multi-focus image fusion method based on stationary wavelet transform and local features of fuzzy sets. IEEE Access 5, 20286–20302 (2017)

    Article  Google Scholar 

  35. Rashno, E., Minaei-Bidgoli, B., Guo, Y.: An effective clustering method based on data indeterminacy in neutrosophic set domain. Eng. Appl. Artif. Intell. 89, 103411 (2020)

    Article  Google Scholar 

Download references

Acknowledgements

This study was funded in part by the Ministry of Science and Technology, Taiwan, under Grant MOST108-2221-E-027-111-MY3, in part by the joint project between the National Taipei University of Technology and the Chang Gung Memorial Hospital under Grant NTUT-CGMH-106-05, and in part by the National Taipei University of Technology International Joint Research Project, NTUT-IJRP-109-03.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Yo-Ping Huang or Jing-Huei Lee.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Huang, YP., Bhalla, K., Chu, HC. et al. Wavelet K-Means Clustering and Fuzzy-Based Method for Segmenting MRI Images Depicting Parkinson’s Disease. Int. J. Fuzzy Syst. 23, 1600–1612 (2021). https://doi.org/10.1007/s40815-021-01053-6

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s40815-021-01053-6

Keywords

Navigation