Data Availability.
All data for this study is available online through the sequencing read archive SRA (NCBI, NIH, Bethesda, Maryland, USA) with the following IDs: PRJNA489753, PRJNA755885, and a control subset of samples included in the 1000Genomes project (ERR031846, ERR031848, ERR031972, ERR034564, SRR070503, SRR070517, SRR070534, SRR070790, SRR070795, SRR077391, SRR099958, SRR099960, SRR099968, SRR765993, SRR769545, SRR101000). The mantle cell lymphoma relapse case sample data sets are available in the online supplement (VCF and BED coverage file) and can be visualized with CNAplot [26].