Segmentation of prostate contours for automated diagnosis using ultrasound images: A survey

https://doi.org/10.1016/j.jocs.2017.04.016Get rights and content

Highlights

  • Survey focuses on Transrectal ultrasound (TRUS) images.

  • Up-to-date comparative analysis of prostate segmentation approaches is proposed.

  • Performance of different segmentation approaches are compared.

  • Strength and limitation of various methods are discussed.

Abstract

Prostate cancer is the most common cancer that affects elderly men. The conventional non-imaging screening test for prostate cancer like prostate antigen (PSA) and digital rectal examination (DRE) tests generally lack specificity. Ultrasound is the most commonly available, inexpensive, non-invasive, and radiation-free imaging modality among all the screening imaging modalities available for prostate cancer diagnosis. The precise segmentation of prostate contours in ultrasound images is crucial in applications such as the exact placement of needles during biopsies, computing the prostate gland volume, and to localize the prostate cancer. Moreover, the low-dose-rate (LDR) brachytherapy treatment in which radioactive seeds are implanted in the prostate region requires accurate contouring of the prostate gland in ultrasound images. Therefore, it is very important to segment the prostrate region accurately for the diagnosis and treatment. This paper aims to present the analysis of existing approaches used for the segmentation of prostate in transrectal ultrasound (TRUS) images. In this survey, different segmentation methods used to extract the prostrate using criteria such as mean absolute distance, Hausdorff distance and time are discussed in detail and compared.

Introduction

After skin cancer, prostate cancer is the most common cancer in USA. According to American cancer society, there are about 180,890 new cases and 26,120 deaths due to prostate cancer in 2016 [1]. Prostate disease can be classified in to three categories: prostatitis, benign prostatic hyperplasia (BHP), and adenocarcinoma [2]. Prostatitis is an inflammation, usually caused by bacteria and can be cured by antibiotics. The BHP is due to the enlargement of prostate and requires surgery in the advanced stage. The adenocarcinoma is the cancerous state of the prostate and if not detected in an early stage, cancer spreads to other organs like bones, seminal vesicles and rectum. Hence, early detection of prostate cancer can significantly reduce the chances of death. The initial diagnosis of prostate cancer includes non-imaging tests such as digital rectal examination [3] and prostate specific antigen lack specificity [4]. These tests are used along with the medical imaging tests such as transrectal ultrasound (TRUS), magnetic resonance imaging (MRI) and computed tomography (CT) scan of prostate [5]. The variation in cellular density can be examined using MRI [6]. Increase in local perfusion can be studied with contrast enhanced computed tomography or MRI [12]. Ultrasound images are most commonly used for screening, as they are inexpensive in comparison with other medical imaging modalities, easy to use, and have no side effects. The ultrasound images are not inferior to MRI or CT images in terms of diagnostic importance [40].

Segmentation in ultrasound modality is highly dependent on the nature of data. Prostate ultrasound images contain high speckle noise, shadow artifacts due to calcification in prostate region, short range of gray levels and boundaries are missing especially at the base and apex region of the prostate [13], which makes the segmentation process difficult. However, ultrasound images are widely used in various computer aided diagnosis (CAD) systems [2], [7], [8], [9], [10], [11], image guided interventions, and various therapies like brachytherapy. In localized prostate cancer, low-dose-rate (LDR) brachytherapy can be used to provide a quick and accurate diagnosis [14]. The brachytherapy implants small radioactive seeds inside the prostate gland. But before the implantation, volume and shape of the prostate region is to be estimated. Therefore, it is very important to segment the prostate from TRUS image accurately. The shape and volume of the prostate is crucial for the diagnosis of prostate cancer [15]. In most of the clinical practice, manual or semi-automated segmentation is performed which is prone to observer variability due to the poor visibility of prostate in ultrasound images [16]. Moreover, the size and shape of the prostate is not fixed, as it changes because of bladder and rectum filling, cancer evolution rate and the effect of anesthesia. Hence, there is high requirement of the real time prostate delineation in clinical applications like brachytherapy where the decisions are made in the operating environment instantly before implantation of seeds [17].

Generally, ultrasound data is of two types (i) B-mode images and (ii) radio frequency (RF) signals. The B-mode ultrasound images are obtained by post-processing of RF signals captured from the transducer. Researchers have shown that there is significant amount of loss of information during this post-processing, which may be useful for classification of prostate region as cancerous or non-cancerous [18]. However, the conventional B-mode images are helpful in segmenting the prostate region. The texture-based and model-based procedures for prostate segmentation in TRUS images are depicted in Fig. 1, Fig. 2 respectively. As TRUS images have low signal-to-noise ratio, speckle noise, and a very large number of edge features which are not a part of prostate contour. Therefore, a pre-processing is required to smooth the image while preserving the edge information [64], [65], [66].

Feature extraction is a crucial step in segmentation process. The major challenge is to extract the most relevant features from the input dataset. Statistical analysis is needed to select the subset of relevant features in model construction. The selected feature sets are used to train the classifier with known training parameters. Model validation techniques like k-fold cross validation, leave-one-out cross validation can be used to validate the final outcome with respect to the ground truth available [68]. As depicted in Fig. 2, Model based segmentation can be either active contour or geometric deformable model based segmentation technique.

In this paper, the primary focus is on the techniques developed for prostate segmentation in TRUS images. The segmentation of prostate from TRUS is important in various stages of clinical decision making process. For example prostate gland segmentation is helpful in determining the volume of the prostate, which aids in brachytherapy and treatment of BHP. Moreover, the prostate boundary obtained from the segmentation process helps in image fusion with other modalities like magnetic resonance imaging and radio frequency data to localize the cancer. Manual contouring of prostate is a difficult task and prone to inter and intra observer variability. Hence, the computer aided semiautomatic or fully automated segmentation techniques are investigated in this paper.

Earlier, Ghose et al. [19] carried out a survey on segmentation of prostate in multiple modalities like TRUS, MR, and CT images. Nobel et al. [20] considered various types of tissues like breast, heart, and prostate in their survey and techniques for vascular disorder are also examined. Zhu et al. [21] published the survey not only focusing on the segmentation of prostate, but also on the classification of ultrasound and MR images in cancerous and non-cancerous, staging of cancer and registration of ultrasound and MR images. Hence the surveys [19], [20], [21] consider wider spectrum. Shao et al. [22] proposed a survey primarily based on the prostate region detection in ultrasound images. Although the survey reported good classification of segmentation techniques, but the precise comparison catalogue is missing for the better comparative analysis. Moreover, there has been significant improvement in the prostate segmentation techniques over the past decade with more focus on the development of fully-automated segmentation techniques which can be used in real time. Therefore, in this paper, we have provided an up-to-date, substantial categorization and comparative analysis of prostate segmentation approaches defined for B-mode TRUS images. Both 2D and 3D TRUS images are covered in this survey.

This paper is structured in five sections with Section 2 concisely representing the prostate ultrasound image enhancement, analysis, and challenges associated with them. The different classes of prostate segmentation approaches, brief description of related papers, Advantages and limitations of various model-based segmentation techniques are discussed in Section 3. The various validation techniques used for the segmentation are described in Section 4. The critical analysis and discussion of various methods are provided in Section 5. Finally, the conclusion and future trends are presented in Section 6.

Section snippets

Image enhancement

A number of techniques [43], [44], [45], [46], [47], [48], [49], [50], [51], [52], [53] have been proposed for segmentation of prostate region from TRUS images and noise removal in ultrasound images. But the literature merely on enhancing the visual appearance of the prostate in TRUS images is limited. In some literature, Bayesian decision theory and stick algorithm [23], [24], [25] is used to identify the most likely set of edges in the TRUS image. Pathak et al. [25] used the concept of sticks

Categorization of prostate segmentation algorithms in ultrasound images

Segmentation in medical imaging plays a crucial role for volumetric and shape measurement of different tissues, feature extraction, surgery planning and analyzing the tissue in more meaningful and easier way. The number of segmentation techniques reported in texture based analysis [35], [36], [37], [38], [39], [40], [41], [42], [43], [44] comes under region based segmentation approaches, model based techniques which includes shape priors based [44], deformable model, and super ellipse [16], [46]

Validation metrics

The performance measures used to validate the segmentation process can be classified into two major categories. Distance based and volume based metrics. These metrics are used to express the variability between the manual and automatic generated contours of the prostate.

Critical analysis and discussion

The survey of the existing literature shows that the detection of prostate boundary from TRUS in an accurate, fast, and reproducible way is a challenging problem. A number of techniques for semi-automated and automated segmentation have been proposed. Although segmentation techniques based on local and global thresholding are simple and computationally fast, but have limited acceptability for TRUS prostate segmentation. However, thresholding based methods are used as the initial step in the

Conclusion and future trend

Detecting the prostate boundary from TRUS in a fast, accurate, and reproducible way is a challenging problem. The need for accurate automated prostate segmentation technique in TRUS images is increasing day by day as number of modern clinical applications like brachytherapy, volume estimation, localization of cancerous region and biopsy needle placement are heavily dependent on the accurate prostate delineation. Region based approaches for prostate delineation is primarily used to refine the

Acknowledgement

This research is funded under Junior Research Fellowship (JRF) scheme by the University Grant Commission (UGC), New Delhi, India.

R. P. Singh, received his B. Tech degree from SUSCET, PTU, Jalandhar (Punjab) in 2010, in Information Technology, and the M.Tech Degree from IGEF, PTU, Jalandhar (Punjab) in 2013, in Computer Science and Engineering. He is awarded with Junior Research Fellow (JRF) award from university grant commission (UGC), New Delhi in 2015. Currently, he is pursuing full time Ph.D in Computer Science and Engineering at University Institute of Engg. & Technology, Panjab University, Chandigarh. His research

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    R. P. Singh, received his B. Tech degree from SUSCET, PTU, Jalandhar (Punjab) in 2010, in Information Technology, and the M.Tech Degree from IGEF, PTU, Jalandhar (Punjab) in 2013, in Computer Science and Engineering. He is awarded with Junior Research Fellow (JRF) award from university grant commission (UGC), New Delhi in 2015. Currently, he is pursuing full time Ph.D in Computer Science and Engineering at University Institute of Engg. & Technology, Panjab University, Chandigarh. His research interests include Medical Image processing, segmentation and classification.

    S. Gupta received her B.Tech. degree from TITS, Bhiwani (Haryana), in 1992, M.E. degree from TIET, Patiala, Punjab, in 1998 both in Computer Science and Engineering. She obtained her Ph.D. degree in 2007 in the field of Medical Ultrasound Image Processing. She has been into the teaching profession since 1992 and has published more than 90 papers in refereed International Journals and conference proceedings. Presently, she is working as Professor in the Department of CSE, University Institute of Engg. & Technology, Panjab University, Chandigarh. She has completed various research projects funded by various agencies like DST, AICTE and MHRD. Her research interests include Medical image processing, Wavelets, Neutrosophic logic, Network security, Wireless sensor networks and Cognitive Enhancement.

    U. R. Acharya, PhD, DEng is a senior faculty member at Ngee Ann Polytechnic, Singapore. He is also (i) Adjunct Professor at University of Malaya, Malaysia, (ii) Adjunct Faculty at Singapore Institute of Technology- University of Glasgow, Singapore, and (iii) Associate faculty at SIM University, Singapore. He received his Ph.D. from National Institute of Technology Karnataka (Surathkal, India) and DEng from Chiba University (Japan). He has published more than 400 papers, in refereed international SCI-IF journals (345), international conference proceedings (42), books (17) with more than 11,500 citations in Google Scholar (with h-index of 55), and Research Gate RG Score of 45.00. He is ranked in the top 1% of the Highly Cited Researchers (2016) in Computer Science according to the Essential Science Indicators of Thomson. He has worked on various funded projects, with grants worth more than 2 million SGD. He has three patents and in the editorial board of many journals. He has served as guest editor for many journals. His major academic interests are in biomedical signal processing, biomedical imaging, data mining, visualization and biophysics for better healthcare design, delivery and therapy. Please visit https://scholar.google.com.sg/citations?user=8FjY99sAAAAJ&hl=en for more details.

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