Elsevier

Neurocomputing

Volume 207, 26 September 2016, Pages 763-771
Neurocomputing

New delay-dependent stability criteria of genetic regulatory networks subject to time-varying delays

https://doi.org/10.1016/j.neucom.2016.05.066Get rights and content

Highlights

  • A delay-dependent stability criterion is proposed for GRNs with time-varying delays.

  • A new Lyapunov–Krasovkii functional is constructed by additionally introducing some triple integral terms.

  • New results with less conservatism are given based on the Jensen inequality, the free-weighting matrix and the convex combination idea.

Abstract

In this paper, the stability analysis problem is investigated for a class of genetic regulatory networks (GRNs) with time-varying delays. Here, the addressed GRNs are modelled by the nonlinear differential equations. A new Lyapunov–Krasovkii functional is constructed by additionally introducing some triple integral terms. By employing the Jensen inequality, the free-weighting matrix and the convex combination idea, a semi-definite programme approach is developed to derive new sufficient condition guaranteeing the global asymptotic stability of the addressed GRNs subject to time-varying delays. Subsequently, a new stability criterion is proposed for GRNs with time-varying delays when the upper bounds of the derivative of the time delays are unknown. It is shown that the feasibility of presented results can be readily checked by using the standard numerical software. Finally, we provide two numerical examples to illustrate the effectiveness and less conservativeness of the proposed stability criteria.

Introduction

Over the past few decades, the genetic regulatory network (GRN) has attracted considerable attention in the biological and biomedical sciences since it can effectively reflect the living organisms of molecular and cellular levels [1], [2]. Accordingly, several types of models have been presented to describe the GRNs, such as the Bayesian network model [3], the Boolean model [4] and the differential equation model [5]. As discussed in [4], the expression of each gene in the network has been assumed to be either ON or OFF and the state of a gene has been described by a Boolean function of the states and other related genes. However, in practical biological model, the gene expression rates are usually continuous variables rather than the ideal switch between ON and OFF. As such, the differential equation model has been introduced, where the concentrations of gene products have been modelled by variables, such as mRNAs and proteins. Recently, it is realized that the GRNs described by differential equations can depict the gene regulatory process in living organisms more efficient.

It is well known that, due to the slow process of transcription, translation and shifting or the finite switching speed of amplifiers, the time-delays are inevitably encountered in the modelling process of GRNs [6], [7]. The existence of the time-delays would degrade the whole system performance and even leads to instability [8], [9], [10], [11], [12], [13]. In fact, the observed oscillatory expression and activity of proteins in GRNs are most likely to be driven by transcriptional delays, and delays can bring high effect on both the dynamical behavior of models and the numerical parameter prediction. Hence, it is of great significance to investigate the stability analysis problem of GRNs with time-varying delays. So far, a great deal of effort has been made concerning the analysis problem of GRNs with time-varying delays and a variety of important results have been published in the literature to examine the effect of the time-varying delays onto the system performance, see e.g. [14], [15], [16], [17], [18], [19], [20] and the references therein.

The main objective of the stability analysis problem of delayed GRNs is to propose new stability criteria and reduce the possible conservativeness caused by the time delays. In reality, the time delay varying in an interval is often encountered and the lower bound of the interval is not strictly restricted to be 0 [16], [17], [18], [19], [20]. By conducting the characteristic equation analysis, in [14], the stability analysis problem of GRNs with time delays modelled by differential equation has been studied. In [15], some stability criteria have been presented to guarantee the global asymptotic stability of the delayed GRNs by using the Lur׳e system approach and constructing the Lyapunov functional. It should be pointed out that the time-varying delays in [15] are assumed to be differentiable and the upper bound of the derivative must be less than 1 [15], which constrain the application of the proposed results in [15]. Compared with [15], new sufficient condition with less conservativeness has been given in [16] by constructing an appropriate Lyapunov–Krasovkii functional involving the lower bounds of delays. Recently, several sufficient criteria have been established to further reduce the conservativeness. For example, in [17], [18], [19], [20], the upper bound of the derivative is allowed to be more than 1. In this paper, we revisit the stability analysis problem of delayed GRNs and aim to propose new sufficient conditions with less conservatism by fully taking the matrix analysis techniques into account.

Motivated by the above discussions, in this paper, we aim to investigate the stability analysis problem of GRNs described by differential equations model with time-varying delays and propose new stability conditions with less conservativeness. A new Lyapunov–Krasovkii functional is constructed with hope to reduce the conservatism caused by the time delays, where some triple integral terms are introduced. By using the Jensen inequality, free-weighting matrix method and convex combination approach, new delay-range-dependent and delay-rate-dependent/independent stability criteria are presented by fully taking the ranges of time-varying delays into account. It is shown that the proposed results are in terms of the matrix inequalities which can be easily verified by using the standard numerical software. Finally, two numerical examples are used to demonstrate the usefulness and less conservativeness of the obtained theoretical results. The main contribution of this paper lies in (1) a new Lyapunov–Krasovskii functional is constructed which contains more information of time-varying delays; and (2) some new stability criteria are given, where the admissible upper bound of time-delay can be enlarged by adequately employing the Jensen inequality, free-weighting matrix and convex combination methods in a same framework.

The rest of this paper is organized as follows. In Section 2, the GRNs with time-varying delays addressed are described and some Lemmas are briefly introduced. In Section 3, the sufficient criteria are given to guarantee the global asymptotic stability of the addressed GRNs. Two numerical examples are presented in Section 4 to show the feasibility and advantages of the main results. Conclusions are given in Section 5.

Notations: The notations used throughout the paper are fairly standard. The superscript T represents the matrix transposition; Rn denotes the n-dimensional Euclidean space; Rn×m is the set of all n×m real matrices; P>0 (P0) means that P is a real symmetric and positive definite (positive semi-definite) matrix; I and 0 represent identity matrix and zero matrix, respectively. diag{·} denotes the diagonal matrix; col{·} means a column vector. In symmetric block matrices or long matrix expressions, we use an asterisk () to represent a term that is induced by symmetry. Matrices, if their dimensions are not explicitly stated, are assumed to be compatible for algebraic operations.

Section snippets

Problem formulations

As in [15], we consider the GRNs with time-varying delays containing n mRNAs and n proteins described by the following delay differential equations:{mi̇(t)=aimi(t)+bi(p1(tσ(t)),p2(tσ(t)),,pn(tσ(t))),pi̇(t)=cipi(t)+dimi(tτ(t)),i=1,2,,n,where mi(t) is the concentration of mRNA of the i-th node at time t, pi(t) is the concentration of protein of the i-th node at time t, ai is the degradation rate of mRNA, ci is the degradation rate of protein, di is the translation rate, σ(t) is

Main results

In this section, based on the Lyapunov stability theory and the matrix analysis techniques, new delay-dependent and delay-rate-dependent/independent stability criteria are given for GRNs with time-varying delays.

Theorem 1

For given positive scalars τ2>τ1, σ2>σ1, μ and d, the GRNs (6) subject to (3), (7) are globally asymptotically stable, if there exist positive-definite matrices P=[Pij]6×6, Qi(i=1,2,,5), Ri(i=1,2,,6), Zi(i=1,2,,8) and Ti(i=1,2,3,4), positive semi-definite diagonal matrices Λ=diag{λ1,

Numerical examples

In this section, two examples are provided to show the effectiveness and less conservativeness of our main results.

Example 1

Consider system (6) with the following parameters:A=diag{3,3,3},C=diag{2.5,2.5,2.5},D=diag{0.8,0.8,0.8},W=[002.52.50002.50],K=diag{0.65,0.65,0.65},fi(yi)=yi2/(1+yi2),τ(t)=3+sin(2t)8,σ(t)=5.5+5cos(t10).Then, τ1=0.25, τ2=0.5, σ1=0.5, σ2=10.5, μ=0.25 and d=0.5 can be obtained. Solving the conditions in Theorem 1 by using the Matlab Toolbox, the feasible solutions can be obtained

Conclusions

In this paper, we have studied the stability analysis problem for GRNs with time-varying delays. A new Lyapunov–Krasovskii functional with triple integral terms has been constructed with hope to reduce the conservativeness of the stability conditions. By employing the Jensen inequality, the free-weighting matrix method and convex combination approach, new stability criteria have been given to ensure the global asymptotic stability of GRNs with time-varying delays. Finally, two numerical

Zhen Li received the B.Sc. degree in Statistics from Harbin University of Science and Technology, Harbin, China, in 2014. She is now working toward the M.Sc. degree in Operational Research and Control Theory with the Department of Applied Mathematics, Harbin University of Science and Technology, Harbin, China. Her current research interests include robust control, time-delay systems and genetic regulation network.

References (46)

  • S. Huang

    Gene expression profiling genetic networks and cellular statesan integrating concept for tumorigenesis and drug discovery

    J. Mol. Med.

    (1999)
  • Z. Wang et al.

    On modeling and state estimation for genetic regulatory networks with polytopic uncertainties

    IEEE Trans. NanoBiosci.

    (2013)
  • N. Friedman et al.

    Using Bayesian networks to analyze expression data

    J. Comput. Biol.

    (2000)
  • A. Graudenzi et al.

    Dynamical properties of a Boolean model of gene regulatory network with memory

    J. Comput. Biol.

    (2011)
  • P. Smolen et al.

    Mathematical modeling of gene networks

    Neuron

    (2000)
  • H. Hirata et al.

    Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop

    Science

    (2002)
  • J. Lewis

    Autoinhibition with transcriptional delaya simple mechanism for the zebrafish somitogenesis oscillator

    Curr. Biol.

    (2003)
  • J. Hu et al.

    State estimation for a class of discrete nonlinear systems with randomly occurring uncertainties and distributed sensor delays

    Int. J. Gen. Syst.

    (2014)
  • J. Liang et al.

    Finite-horizon H filtering for time-varying delay systems with randomly varying nonlinearities and sensor saturations

    Syst. Sci. Control Eng.: Open Access J.

    (2014)
  • J. Hu et al.

    Gain-constrained recursive filtering with stochastic nonlinearities and probabilistic sensor delays

    IEEE Trans. Signal Process.

    (2013)
  • G. Wei et al.

    Reliable H filtering for discrete piecewise linear systems with infinite distributed delays

    Int. J. Gen. Syst.

    (2014)
  • J. Hu et al.

    Estimation, filtering and fusion for networked systems with network-induced phenomenanew progress and prospects

    Inf. Fusion

    (2016)
  • J. Jian et al.

    Global stability in Lagrange sense for BAM-type Cohen–Grossberg neural networks with time-varying delays

    Syst. Sci. Control Eng.: Open Access J.

    (2015)
  • L. Chen et al.

    Stability of genetic regulatory networks with time delay

    IEEE Trans. Autom. Control

    (2002)
  • C. Li et al.

    Stability of genetic networks with SUM regulatory logicLur׳e system and LMI approach

    IEEE Trans. Circuits Syst. I: Fundam. Theory Appl.

    (2006)
  • F. Ren et al.

    Asymptotic and robust stability of genetic regulatory networks with time-varying delays

    Neurocomputing

    (2008)
  • H. Wu et al.

    Robust stability for uncertain genetic regulatory networks with interval time-varying delays

    Inf. Sci.

    (2010)
  • W. Feng et al.

    Stability of genetic regulatory networks with interval time-varying delays via convex combination method

    J. Netw.

    (2014)
  • W. Wang et al.

    Stochastic stability analysis of uncertain genetic regulatory networks with mixed time-varying delays

    Neurocomputing

    (2012)
  • J.H. Koo et al.

    An improved robust delay-dependent stability criterion for genetic regulatory networks with interval time delays

    Commun. Nonlinear Sci. Numer. Simul.

    (2012)
  • H. Bolouri et al.

    Modelling transcriptional regulatory networks

    Bioessays

    (2002)
  • H. De Jong

    Modeling and simulation of genetic regulatory systemsa literature review

    J. Comput. Biol.

    (2002)
  • C.H. Yuh et al.

    Genomic cis-regulatory logicexperimental and computational analysis of a sea urchin gene

    Science

    (1998)
  • Cited by (0)

    Zhen Li received the B.Sc. degree in Statistics from Harbin University of Science and Technology, Harbin, China, in 2014. She is now working toward the M.Sc. degree in Operational Research and Control Theory with the Department of Applied Mathematics, Harbin University of Science and Technology, Harbin, China. Her current research interests include robust control, time-delay systems and genetic regulation network.

    Dongyan Chen received the B.Sc. degree in Mathematics from Northeast Normal University, Changchun, China, in 1985, M.Sc. degree in Operational Research from Jilin University, Changchun, China, in 1988, and the Ph.D. degree in Aerocraft Design from Harbin Institute of Technology, Harbin, China, in 2000. She is now a Professor and Ph.D. Supervisor with the Department of Applied Mathematics, Harbin University of Science and Technology, Harbin, China. Her current research interests include robust control, time-delay systems, optimization approach, system optimization and supply chain management.

    Yurong Liu was born in China in 1964. He received his B.Sc. degree in Mathematics from Suzhou University, Suzhou, China, in 1986, the M.Sc. degree in Applied Mathematics from Nanjing University of Science and Technology, Nanjing, China, in 1989, and the Ph.D. degree in Applied Mathematics from Suzhou University, Suzhou, China, in 2001.

    Dr. Liu is currently a professor with the Department of Mathematics at Yangzhou University, China. He also serves as an Associate Editor of Neurocomputing. So far, he has published more than 50 papers in refereed international journals. His current interests include stochastic control, neural networks, complex networks, nonlinear dynamics, time-delay systems, multi-agent systems, and chaotic dynamics.

    Yanfeng Zhao received the B.Sc. degree in Information and Computation Science and M.Sc. degree in Basic Mathematics from Harbin University of Science and Technology, Harbin, China, in 2004 and 2009, respectively. He is currently a Lecture in Graduate Department, Harbin University of Science and Technology, Harbin, China, and working toward the Ph.D. degree in Control Theory and Control Engineering with the College of Automation, Harbin Engineering University, Harbin, China. His current research interests include robust control, genetic regulation network and Kalman filtering.

    This work was supported in part by the National Natural Science Foundation of China under Grants 11271103 and 11301118, the Fok Ying Tung Education Foundation of China under Grant 151004, and the Youth Science Foundation of Heilongjiang Province of China under Grant QC2015085.

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