Statistical bias and variance of gene selection and cross validation methods: A case study on hypertension prediction | IEEE Conference Publication | IEEE Xplore

Statistical bias and variance of gene selection and cross validation methods: A case study on hypertension prediction


Abstract:

In exploratory association studies of genes with certain diseases, a single or a small number of genes (features) related with the diseases are selected1 among many thous...Show More

Abstract:

In exploratory association studies of genes with certain diseases, a single or a small number of genes (features) related with the diseases are selected1 among many thousands investigated. We investigate the statistical bias and variance of simple yet common (correlation and mutual information based) feature selection algorithms using well-known cross-validation methods (leave-one-out and k-fold) on a gene finding study for hypertension prediction. Our findings show that selected genes are different for different methods and different cross-validation runs for both single gene selection and gene subset selection.
Date of Conference: 05-07 January 2012
Date Added to IEEE Xplore: 07 June 2012
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Conference Location: Hong Kong, China

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