Recentering and Restarting Genetic Algorithm variations for DNA Fragment Assembly | IEEE Conference Publication | IEEE Xplore

Recentering and Restarting Genetic Algorithm variations for DNA Fragment Assembly


Abstract:

The Fragment Assembly Problem is a major component of the DNA sequencing process that is identified as being NP-Hard. A variety of approaches to this problem have been us...Show More

Abstract:

The Fragment Assembly Problem is a major component of the DNA sequencing process that is identified as being NP-Hard. A variety of approaches to this problem have been used, including overlap-layout-consensus, de Bruijn graphs, and greedy graph based algorithms. The overlap-layout-consensus approach is one of the more popular strategies which has been studied on a collection of heuristics and metaheuristics. In this study heuristics and Genetic Algorithm variations are combined to exploit their respective benefits. These algorithms were able to produce results that surpassed the best results obtained by a collection of state-of-the-art metaheuristics on ten of sixteen popular benchmark data sets.
Date of Conference: 21-24 May 2014
Date Added to IEEE Xplore: 30 June 2014
Electronic ISBN:978-1-4799-4536-8
Conference Location: Honolulu, HI, USA

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