Power densities and thermal hotspots are a major concern for the dependability of future multi-processor systemon- chip. They can lead to transient faults affecting the functionality in the short term and can cause permanent damage of a device. The dependability problem can be tackled on different layers such as technology hardening or application awareness. This work is based on an approach that addresses the issue for tile-based manycore system-on-chip on software and architecture layer. An agent-based system management employs task migration to react to thermal hotspots and pro-actively avoid them. The inter-task communication plays an important role as communication channels need to be migrated accordingly. The presented work focuses on the issue of communication migration and is based on the idea of handling it transparently to the task migration. Network-on-chip protection switching techniques have been introduced before and in this paper we evaluate the potential and bottlenecks of such methods in a realistic platform.