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Efficient scheduling of rate law functions for ODE-based multimodel biochemical simulation on an FPGA | IEEE Conference Publication | IEEE Xplore

Efficient scheduling of rate law functions for ODE-based multimodel biochemical simulation on an FPGA


Abstract:

A reconfigurable biochemical simulator by solving ordinary differential equations has received attention as a personal high speed environment for biochemical researchers....Show More

Abstract:

A reconfigurable biochemical simulator by solving ordinary differential equations has received attention as a personal high speed environment for biochemical researchers. For efficient use of the reconfigurable hardware, static scheduling of high-throughput arithmetic pipeline structures is essential. This paper shows and compares some scheduling alternatives, and analyzes the tradeoffs between performance and hardware amount. Through the evaluation, it is shown that the sharing first scheduling reduces the hardware cost by 33.8% in average, with the up to 11.5% throughput degradation. Effects of sharing of rate law functions are also analyzed.
Date of Conference: 24-26 August 2005
Date Added to IEEE Xplore: 10 October 2005
Print ISBN:0-7803-9362-7

ISSN Information:

Conference Location: Tampere, Finland

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