We proposed a Deep Self-Organizing Map (DSOM) algorithm which is completely different from the existing multi-layers SOM algorithms, such as SOINN. It consists of layers of alternating self-organizing map and sampling operator. The self-organizing layer is made up of certain numbers of SOMs, with each map only looking at a local region block on its input. The winning neuron's index value from every SOM in self-organizing layer is then organized in the sampling layer to generate another 2D map, which could then be fed to a second self-organizing layer. In this way, local information is gathered together, forming more global information in higher layers. The construction method of the DSOM is unique and will be introduced in this paper. Experiments were carried out to discuss how the DSOM architecture parameters affect the performance. We evaluate our proposed DSOM on MNIST and CASIA-HWDB1.1 dataset. Experimental results show that DSOM outperforms the original supervised SOM by 7:17% on MNIST and 7:25% on CASIA-HWDB1.1.