Leyla Jael Garcia Castro
ABSTRACT
We have reviewed different approaches on community-based annotation on protein and gene sequences, mainly relying on the wiki paradigms. Currently such approaches are not fully exploiting the social component that naturally emerges within communities. We propose a model, namely Tagsty, that enables a community to semantically annotate protein sequences while benefit from the emerged social network. We argue that such environment lowers the barriers on extracting semantic content from social platforms, enables users to share new content, and facilitates knowledge discovery. We also present an architecture supporting our proposal.
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Digital Library
- Jaschke, R., Hotho, A., Schmitz, C., Ganter, B., Stumme, G.: Discovering shared conceptualizations in folksonomies. Web Semantics: Science, Services and Agents on the World Wide Web 6 (2008) 38--53 Google ScholarDigital Library
- Helic, D., Strohmaier, M., Trattner, C., Muhr, M., Lerman, K.: Pragmatic evaluation of folksonomies. International World Wide Web Conference. ACM, Hyderabad, India (2011) Google ScholarDigital Library
- Mons, B., Ashburner, M., Chichester, C., Van Milligen, E., Weeber, M., den Dunnen, J., Bairoch, A.: Calling on a million minds for community annotation in WikiProteins. Genome Biology (2008)Google Scholar
- Huss, J. W., Lindenbaum, P., Martone, M., Roberts, D., Pizarro, A., Valafar, F., Hogenesch, J. B., Su, A. I.: The Gene Wiki: community intelligence applied to human gene annotation. Nucleic Acids Research 38 D633-D639Google ScholarCross Ref
- Prlic, A., Down A. Thomas, Kulesha, E., Finn D. Robert, Kahari, A., Hubbard, J. T.: Integrating sequence and structural biology with DAS. BMC Bioinformatics 8 (2007)Google Scholar
- Ciccarese, P., Ocana, M., Garcia Castro, L. J., Das, S., Clark, T.: An Open Annotation Ontology for Science on Web 3.0. Journal of Biomedical Semantics 2 (2011)Google ScholarCross Ref
- Villaveces, J. M., Jimenez, R. C., Garcia, L. J., Salazar, G. A., Gel, B., Mulder, N., Martin, M., Garcia, A., Hermjakob, H.: Dasty3, a WEB framework for DAS. Bioinformatics 27 (2011) 2616--2617 Google ScholarDigital Library
- Jimenez, R., Quinn, A., Garcia, A., Labarga, A., O'Neil, K., Martinez, F., Salazar, G., Hermjakob, H.: DASTY2, an AJAX protein DAS client. Bioinformatics 24 (2008) 2119--2121 Google ScholarDigital Library
Index Terms
- Tagsty: augmented knowledge from community-based annotations on protein sequences
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