Bit-patterned medium (BPM) is one of the promising approaches for ultra-high density magnetic recording systems. However, BPM requires precise write synchronization, and exhibits write-errors due to insufficient write field gradient, medium switching field distribution (SFD), demagnetization field from adjacent islands, and island position variation. In this paper, an iterative decoding system using a non-binary low-density parity-check (LDPC) code is considered for a BPM R/W channel with write-errors at an areal recording density of 2Tbit/inch² including the coding rate loss. The performance of the iterative decoding system using the non-binary LDPC code over the Galois field GF(2⁸) is evaluated by computer simulation, and it is compared with the conventional iterative decoding system using a binary LDPC code. The results show that the non-binary LDPC system has a larger write margin than the binary LDPC system.