To aim to achieve a high-performance computation for microwave simulations with low cost, small size machine and low energy consumption, a method of the FDTD dedicated computer has been investigated. It was shown by VHDL logical circuit simulations that the FDTD dedicated computer with a dataflow architecture has much higher performance than that of high-end PC and GPU. Then the remaining task of this work is large scale computations by the dedicated computer, since microwave simulations for only 18×18×Z grid space (Z is the number of girds for z direction) can be executed in a single FPGA at most. To treat much larger numerical model size for practical applications, this paper considers an implementation of a domain decomposition method operation of the FDTD dedicated computer in a single FPGA.