The objective of the paper is to present a case study about innovations of business processes related to bachelors' and masters' theses on the Faculty of Electrical Engineering of University Sarajevo by applying concepts of business process management (BPM) on those business processes. Theoretical context of the paper is created by presenting BPM concepts. Then, these concepts where applied on the case study of business processes of Faculty. Those processes are led through first phase of BPM lifecycle. In the phase of process design, current processes are analyzed, problems are recognized, and the new processes are proposed. Innovations of Faculty's information system are proposed and described.