loading
Papers Papers/2022 Papers Papers/2022

Research.Publish.Connect.

Paper

Paper Unlock

Authors: Peter Sarkozy 1 ; Márton Enyedi 2 and Peter Antal 1

Affiliations: 1 Budapest University of Technology and Economics, Hungary ; 2 Hungarian Academy of Sciences, Hungary

Keyword(s): Next Generation Sequencing, Homopolymer Errors, Pyrosequencing, Semiconductor Sequencing, Visualization.

Related Ontology Subjects/Areas/Topics: Algorithms and Software Tools ; Artificial Intelligence ; Bioinformatics ; Biomedical Engineering ; Image Analysis ; Next Generation Sequencing ; Sequence Analysis ; Soft Computing ; Visualization

Abstract: We characterized the error sources of multiple resequencing measurements performed on the Ion Torrent Personal Genome Machines and the Roche 454 sequencing platforms. Homopolymer insertions and deletions are the most common error types for these platforms, and there are many underlying factors which define their occurrence patterns. In the paper we investigate the effect of flow order, specifically the difference in the average value of the flow values for each homopolymer run length, based on the position in the flow cycle.

CC BY-NC-ND 4.0

Sign In Guest: Register as new SciTePress user now for free.

Sign In SciTePress user: please login.

PDF ImageMy Papers

You are not signed in, therefore limits apply to your IP address 3.141.8.247

In the current month:
Recent papers: 100 available of 100 total
2+ years older papers: 200 available of 200 total

Paper citation in several formats:
Sarkozy, P.; Enyedi, M. and Antal, P. (2014). Flow Index based Characterization of next Generation Sequencing Errors - Visualizing Pyrosequencing and Semiconductor Sequencing to Cope with Homopolymer Errors. In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2014) - BIOINFORMATICS; ISBN 978-989-758-012-3; ISSN 2184-4305, SciTePress, pages 271-277. DOI: 10.5220/0004924902710277

@conference{bioinformatics14,
author={Peter Sarkozy. and Márton Enyedi. and Peter Antal.},
title={Flow Index based Characterization of next Generation Sequencing Errors - Visualizing Pyrosequencing and Semiconductor Sequencing to Cope with Homopolymer Errors},
booktitle={Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2014) - BIOINFORMATICS},
year={2014},
pages={271-277},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0004924902710277},
isbn={978-989-758-012-3},
issn={2184-4305},
}

TY - CONF

JO - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2014) - BIOINFORMATICS
TI - Flow Index based Characterization of next Generation Sequencing Errors - Visualizing Pyrosequencing and Semiconductor Sequencing to Cope with Homopolymer Errors
SN - 978-989-758-012-3
IS - 2184-4305
AU - Sarkozy, P.
AU - Enyedi, M.
AU - Antal, P.
PY - 2014
SP - 271
EP - 277
DO - 10.5220/0004924902710277
PB - SciTePress

- Science and Technology Publications, Lda.
RESOURCES

Proceedings

Papers

Authors

Ontology

CONTACTS

Science and Technology Publications, Lda
Avenida de S. Francisco Xavier, Lote 7 Cv. C,
2900-616 Setúbal, Portugal.

Phone: +351 265 520 185 (National fixed network call)
Fax: +351 265 520 186
Email: info@scitepress.org

EXTERNAL LINKS

PRIMORIS

INSTICC

SCITEVENTS

CROSSREF

PROCEEDINGS SUBMITTED FOR INDEXATION BY:

dblp

Ei Compendex

SCOPUS

Semantic Scholar

Google Scholar

Microsoft Academic