ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes

Askarbek Orakov; Askarbek Orakov; Nazgul Sakenova; Nazgul Sakenova; Igor Goryanin; Igor Goryanin; Igor Goryanin; Anatoly Sorokin; Anatoly Sorokin

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Paper

ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes

Topics: Algorithms and Software Tools; Databases and Data Management; Next Generation Sequencing; Visualization

In Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOSTEC, 196-200, 2018 , Funchal, Madeira, Portugal

Authors: Askarbek Orakov ^{1

;

2} ; Nazgul Sakenova ^{1

;

2} ; Igor Goryanin ^{3

;

4

;

1} and Anatoly Sorokin ^{5

;

6}

Affiliations: ¹ Okinawa Institute of Science and Technology, Japan ; ² Nazarbayev University, Kazakhstan ; ³ Tianjin Institute of Industrial Biotechnology, China ; ⁴ University of Edinburgh, United Kingdom ; ⁵ Institute of Cell Biophysics RAS, Russian Federation ; ⁶ Moscow Institute of Physics and Technology, Russian Federation

Keyword(s): Metagenomics, Interactive Data Analysis, Functional Analysis, KEGG Pathways, Taxonomic Analysis.

Abstract: The functional and taxonomic analysis is the critical step in understanding the interspecies interaction within the microbial communities. Currently, these types of analysis are run independently, which makes interpretation of the results hard and error-prone. Here we present ASAR (Advanced metagenomic Sequence Analysis in R) Database, the interactive tool and the databases for storage and exploratory analysis of the metagenomic sequencing data along three dimensions: taxonomy, function, and environmental conditions.

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Paper citation in several formats:

Orakov, A.; Sakenova, N.; Goryanin, I. and Sorokin, A. (2018). ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes. In Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018) - BIOINFORMATICS; ISBN 978-989-758-280-6; ISSN 2184-4305, SciTePress, pages 196-200. DOI: 10.5220/0006722801960200

@conference{bioinformatics18,
author={Askarbek Orakov. and Nazgul Sakenova. and Igor Goryanin. and Anatoly Sorokin.},
title={ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes},
booktitle={Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018) - BIOINFORMATICS},
year={2018},
pages={196-200},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0006722801960200},
isbn={978-989-758-280-6},
issn={2184-4305},
}

TY - CONF

JO - Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018) - BIOINFORMATICS
TI - ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes
SN - 978-989-758-280-6
IS - 2184-4305
AU - Orakov, A.
AU - Sakenova, N.
AU - Goryanin, I.
AU - Sorokin, A.
PY - 2018
SP - 196
EP - 200
DO - 10.5220/0006722801960200
PB - SciTePress