Authors:
Jordi Bartolome
1
;
Rui Alves
2
and
Francesc Solsona
1
Affiliations:
1
Dept. of Computer and Industrial Engineerings, Universitat de Lleida, C/Jaume II 69, Lleida, Spain
;
2
Dept. of Basic Medical Sciences, Universitat de Lleida, C/Montserrat Roig 2, Lleida, Spain
Keyword(s):
Systems, Biology, Model, Simulation, Stochastic, Deterministic, User-friendly, Web, Application, Mathematica.
Abstract:
EasyModel is a user-friendly web application that uses Wolfram webMathematica for performing simulations and analysis of systems biology models. EasyModel lets users create new models, load models from the BioModels database, and import preexisting models from SBML files. EasyModel mainly targets the student of bioinformatics or systems biology without the need of having Mathematica programming knowledge. In addition, expert programmers may find it useful as a tool for quickly implementing new models in Mathematica, which can then be downloaded as Mathematica notebooks to be tailored locally for more advanced simulation and analysis. The version described in this manuscript introduces the stochastic simulation feature. EasyModel is freely available at https://easymodel.udl.cat