Skip to main content

SemanticBio: Building Conceptual Scientific Workflows over Web Services

  • Conference paper
Data Integration in the Life Sciences (DILS 2005)

Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 3615))

Included in the following conference series:

  • 850 Accesses

Abstract

We introduce here the SemanticBio system, which allows expressing scientific protocols as workflows that manipulate scientific objects represented in an ontology. The different tasks are executed using web services, which address many interoperability issues, and are available as interfaces to a variety of life science resources.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Similar content being viewed by others

References

  1. Lawson, A.: The Living World - BIO100. McGraw Hill Primis, New York (1999)

    Google Scholar 

  2. Galperin, M.Y.: The Molecular Biology Database Collection: 2005 update. Nucleic Acids Res. 33 (Database Issue), 5–24 (2005)

    Article  Google Scholar 

  3. Gao, T.H., Hayes, J.H., Cai, H.: Integrating biological research through web services. IEEE Computer 38, 26–31 (2005)

    Google Scholar 

  4. Martin, D., Burstein, M., Hobbs, J., Lassila, O., McDermott, D., McIlraith, S., Narayanan, S., Paolucci, M., Parsia, B., Payne, T., Sirin, E., Srinivasan, N., Sycara, K.: OWL-S: Semantic Markup for Web Services. W3C Working Draft (2004), http://www.daml.org/services/owl-s/1.1/overview/

  5. Eckman, B.A., Deutsch, K., Janer, M., Lacroix, Z., Raschid, L.: A Query Language to Support Scientific Discovery. In: Computational Systems Bioinformatics, pp. 388–391. IEEE Computer Society, Los Alamitos (2003)

    Google Scholar 

  6. Lacroix, Z., Parekh, K., Vidal, M.E., Cardenas, M., Marquez, N.: BioNavigation: Selecting optimum paths through biological resources to evaluate ontological navigational queries. In: Ludäscher, B., Raschid, L. (eds.) DILS 2005. LNCS (LNBI), vol. 3615, pp. 275–283. Springer, Heidelberg (2005)

    Chapter  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2005 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Lacroix, Z., Ménager, H. (2005). SemanticBio: Building Conceptual Scientific Workflows over Web Services. In: Ludäscher, B., Raschid, L. (eds) Data Integration in the Life Sciences. DILS 2005. Lecture Notes in Computer Science(), vol 3615. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11530084_26

Download citation

  • DOI: https://doi.org/10.1007/11530084_26

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-27967-9

  • Online ISBN: 978-3-540-31879-8

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics