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Evaluation of the Contents of Partitions Obtained with Clustering Gene Expression Data

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Advances in Bioinformatics and Computational Biology (BSB 2005)

Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 3594))

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Abstract

This work investigates the behavior of two different clustering algorithms, with two proximity measures, in terms of the contents of the partitions obtained with them. An analysis of how the classes are separated by these algorithms, as different numbers of clusters are generated, is also presented. A discussion on the use of these information in the identification of special cases for further analysis by biologists is presented.

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References

  1. Monti, E., Tamayo, P., Mesirov, J., Golub, T.: Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data. Machine Learning 52, 91–118 (2003)

    Article  MATH  Google Scholar 

  2. Jiang, D., Tang, C., Zhang, A.: Cluster Analysis for Gene Expression Data: A Survey. IEEE Trans. Knowl. Data Eng. 16(11), 1370–1386 (2004)

    Article  Google Scholar 

  3. Herrero, J., Valencia, A., Dopazo, J.: A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics 17(2), 126–136 (2001)

    Article  Google Scholar 

  4. Jain, A., Dubes, R.: Algorithms for Clustering Data. Prentice Hall, Englewood Cliffs (1988)

    MATH  Google Scholar 

  5. Yeoh, E.J., et al.: Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell. 1(2), 133–143 (2002)

    Article  Google Scholar 

  6. Halkidi, M., Batistakis, Y., Vazirgiannis, M.: Cluster validity methods: Part I. SIGMOD Record 31(2), 40–45 (2002)

    Article  Google Scholar 

  7. Law, M.H., Jain, A.K.: Cluster validity by bootstrapping partitions. TR MSU-CSE-03-5, Dept. Comp. Science and Eng., Michigan State University (2003)

    Google Scholar 

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© 2005 Springer-Verlag Berlin Heidelberg

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Faceli, K., de Carvalho, A.C.P.L.F., de Souto, M.C.P. (2005). Evaluation of the Contents of Partitions Obtained with Clustering Gene Expression Data. In: Setubal, J.C., Verjovski-Almeida, S. (eds) Advances in Bioinformatics and Computational Biology. BSB 2005. Lecture Notes in Computer Science(), vol 3594. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11532323_8

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  • DOI: https://doi.org/10.1007/11532323_8

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-28008-8

  • Online ISBN: 978-3-540-31861-3

  • eBook Packages: Computer ScienceComputer Science (R0)

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