Abstract
Scientific and industry research heavily depend on the scientific data and archives. There are lots of different, non-interoperable resources in Metropolis. By using Grid, putting the scientific resources together to form a shared metropolis research platform can facilitate the research processes, which could lead to enhance metropolis technique force and innovation ability, i.e, the integration of various biological databases and the data mining service can greatly help the biologist to search, analyze biological sequences. The architecture of the SRP and its main services are introduced in this paper. The way how to integration of scientific data and archives are discussed in detail.
This paper is supported by national natural science foundation of china (No.60573093).
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References
Altchul, S.F., et al.: Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res. 25(17), 3389–3402 (1997)
Boeckmann, B., Bairoch, A., Apweiler, R., Blatter, M.C., Estreicher, A., Gasteiger, E., Martin, M.J., et al.: The SWISSPROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 31(1), 365–370 (2003)
Nelson, M.L., Calhoun, J.R., Mackey, C.E.: The OAI-PMH NASA technical report server. In: Proceedings of the 2004 Joint ACM/IEEE Conference on Digital Libraries, June 7-11, pp. 400–408 (2004)
Hey, T., Trefethen, A.E.: Cyberinfrastructure for e-Science. Science, vol. 308, May 6 (2005)
Gullapalli, S., Dyke, S., Hubbard, P., et al.: Showcasing the features and capabilities of NEESgrid: a grid based system for the earthquake engineering domain. In: Proceedings of 13th IEEE International Symposium on High performance Distributed Computing, June 4-6, pp. 268–269 (2004)
Texas Internet Grid for Research and Education (TIGRE) project web page, http://www.hipcat.net/Projects/tigre (access date: April 10, 2005)
Welch, V., Siebenlist, F., Foster, I., et al.: Security for Grid Services. In: Proceedings of the 12th IEEE International Symposium on High Performance Distributed Computing (HPDC-12), pp. 48–57. IEEE Computer Society Press, Washington (2003)
The Workow Reference Model web page, http://www.aiim.org/wfmc/standards/docs/tc003v11.pdf (access date: April 10, 2005)
von Laszewski, G., Foster, I., Gawor, J., Lane, P.: A Java Commodity Grid Toolkit. In: Concurrency: Practice and Experience, p. 13 (2001)
Christensen, E., Curbera, F. (eds.): Web Services Description Language (WSDL) 1.1. W3C Note (March 2001), http://www.w3.org/TR/wsdl
Ashburner, M., Ball, C.A., Blake, J.A., et al.: Gene ontology: tool for the unification of biology. Nature Genet 25(1), 25–29 (2000)
Graham, P.J., Sloan, T.M., et al.: FirstDIG: Data Investigations using OGSA-DAI. OGSA-DAI mini-workshop. In: AHM 2004 (2004)
OGSA-DAI web page, http://www.ogsadai.org.uk (access date: April 10, 2005).
Nedim Alpdemir, M., Mukherjee, A., Gounaris, A., et al.: OGSA-DQP: A Service for Distributed Querying on the Grid. In: Bertino, E., Christodoulakis, S., Plexousakis, D., Christophides, V., Koubarakis, M., Böhm, K., Ferrari, E. (eds.) EDBT 2004. LNCS, vol. 2992, pp. 858–861. Springer, Heidelberg (2004)
Alpdemir, N., Mukherjee, A., Gounaris, A., et al.: Using OGSA-DQP to Support Scientific Applications for the Grid. In: Herrero, P., S. Pérez, M., Robles, V. (eds.) SAG 2004. LNCS, vol. 3458, pp. 1–13. Springer, Heidelberg (2005)
Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., Rapp, B.A., Wheeler, D.L.: Gen Bank. Nucleic Acids Research 28(1), 15–18 (2000)
Stoesser, G., Sterk, P., Tuli, M.A., et al.: The EMBL Nucleotide Sequence Database. Nucl. Acids. Res. 32(1), 27–30 (2004)
Miyazaki, S., Sugawara, H., Ikeo, K., et al.: DDBJ in the stream of various biological data. Nucl. Acids. Res. 32(1), 31–34 (2004)
Barker, W.C., Garavelli, J.S., Huong, H., et al.: The Protein Information Resource (PIR). Nucl. Acids. Res. 28(1), 41–44 (2000)
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Chen, Y., Wang, Y., Zhu, Y. (2006). Grid-Enabled Metropolis Shared Research Platform. In: Shen, H.T., Li, J., Li, M., Ni, J., Wang, W. (eds) Advanced Web and Network Technologies, and Applications. APWeb 2006. Lecture Notes in Computer Science, vol 3842. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11610496_62
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DOI: https://doi.org/10.1007/11610496_62
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