Skip to main content

Classification of Caenorhabditis Elegans Behavioural Phenotypes Using an Improved Binarization Method

  • Conference paper
  • First Online:
Rough Sets, Fuzzy Sets, Data Mining, and Granular Computing (RSFDGrC 2003)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 2639))

Abstract

Because of simple model organisms, Caenorhabditis (C.) elegans is often used in genetic analysis in neuroscience. The classification and analysis of C. elegans was previously performed subjectively. So the result of classification is not reliable and often imprecise. For this reason, automated video capture and analysis systems appeared. In this paper, we propose an improved binarization method using a hole detection algorithm. Using our method, we can preserve the hole and remove the noise, so that the accuracy of features is improved. In order to improve the classification success rate, we add new feature sets to the features of previous work. We also add 3 more mutant types of worms to the previous 6 types, and then analyze their behavioural characteristics.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Hodkin, J.: Male phenotypes and mating efficienty in Caenorhabditis elegans. Genetics 1983) 43–64

    Google Scholar 

  2. Waggoner, L., et al.: Control of behavioral states by serotonin in Caenorhabditis elegans. Neuron (1998) 203–214

    Google Scholar 

  3. Zhou, G.T., Schafer, W.R., Schafer, R.W.: A three-state biological point process model and its parameter estimation. IEEE Trans On Signal Processing (1998) 2698–2707

    Google Scholar 

  4. Baek, J.H., et al.: Using machine vision to analyze and classify Caenorhabditis elegans behavioral phenotypes quantitatively. Journal of Neuroscience Methods, Vol. 118. (2002) 9–21

    Article  Google Scholar 

  5. Gonzalez, R.C., Woods, R.E.: Digital Image Processing. Prentice Hall Inc., New Jersey (2002)

    Google Scholar 

  6. Jain, R., Kasturi, R., Schunck, B.G.: Machine Vision. McGraw-Hill Inc., New York (1995)

    Google Scholar 

  7. Breiman, L., Friedman, J.H., Olshen, R.A., Stone, C.J.: Classification and regression trees. Chapman & Hall Inc., New York (1984)

    MATH  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2003 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Nah, W., Baek, JH. (2003). Classification of Caenorhabditis Elegans Behavioural Phenotypes Using an Improved Binarization Method. In: Wang, G., Liu, Q., Yao, Y., Skowron, A. (eds) Rough Sets, Fuzzy Sets, Data Mining, and Granular Computing. RSFDGrC 2003. Lecture Notes in Computer Science(), vol 2639. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-39205-X_91

Download citation

  • DOI: https://doi.org/10.1007/3-540-39205-X_91

  • Published:

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-14040-5

  • Online ISBN: 978-3-540-39205-7

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics