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Constraint Satisfaction for Reconciling Heterogeneous Tree Databases

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Database and Expert Systems Applications (DEXA 2000)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 1873))

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Abstract

In order to simplify the reconciliation of two heterogeneous tree databases, we must minimize the number of crossovers in a directed graph constructed using two subtrees selected from the databases. This paper proposes a method for minimizing the number of crossovers in the directed graph. To find the directed graph with the minimum number of crossovers, the method maintains zero-crossovers in each ordered subtree. The resulting directed graph is defined as a semi-optimal solution satisfying the zero-crossover constraint for edges connecting two leaf sequences. It is computed by changing the order of non-leaf nodes in each hierarchical level of the ordered tree and swapping leaf nodes in each of the two leaf layers. To maintain the zero-crossover constraint for each ordered tree in the matrix transformation, the method also finds the two leaf clusters that contain half of the leaf nodes and swaps the leaf clusters.

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References

  1. Goodman, M., Czelusniak, J., Romero-Herrera, A. E., and Matsuda, G.: Fitting the Gene Lineage into its Species Lineage: A parsimony strategy illustrated by Cladograms Constructed from Globin Sequences, Systematic Zoology, Vol. 28 (1979) 132–168.

    Article  Google Scholar 

  2. Page, R.D.M., and Charleston, M.A.: Reconciled Trees and Incongruent Gene and Species Trees, In: B Mirkin, F R McMorris, F S Roberts and A Rzhetsky (eds), Mathematical Hierarchies in Biology, DIMACS Series in Discrete Mathematics and Theoretical Computer Science, American Mathematical Society, Vol. 37 (1997) 57–70.

    Google Scholar 

  3. Yoshida, T., Kondo, T., and Nishida, S.: Discovering Conceptual Differences among Different People via Diverse Structures, Proceedings of the Third Pacific-Asia Conference on Knowledge Discovery and Data Mining, Beijing in China (1999).

    Google Scholar 

  4. De Marsicoi, M., et al.: Indexing Pictorial Documents by their Content, A Survey of Current Techniques, Image and Vision Computing, Vol. 15 (1997) 119–141.

    Article  Google Scholar 

  5. Kanellakis P.: Constraint Programming and Database Languages: A Tutorial, Proc. of ACM POS’95 (1995) 46–53.

    Google Scholar 

  6. Warfield John N.: Crossing Theory and Hierarchy Mapping, IEEE Transaction on Systems, Man, and Cybernetics (1977) 505–523.

    Google Scholar 

  7. Sugiyama K., Tanaka S., and Toda M.: Methods for Visual Understanding of Hierarchical System Structures, IEEE Transaction on Systems, Man, and Cybernetics (1981) 109–125.

    Google Scholar 

  8. Ullman Jeffery D.: Database and Knowledge-Base Systems, Vol. 1, Computer Science Press (1988).

    Google Scholar 

  9. Kitakami Hajime, Mori Yasuma, Arikawa Masatoshi, Sato Akira.: Integration Method for Biological Taxonomy Databases in the Presence of Semantic Heterogeneity, IEICE, Vol. J-82-D1, No. 1 (1999) 303–314.

    Google Scholar 

  10. Saitou Naruya et al.: Phylogenetic Tree Database (JUNGLE), http://smiler.lab.nig.ac.jp/jungle/jungle.html (1998).

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© 2000 Springer-Verlag Berlin Heidelberg

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Kitakami, H., Nishimoto, M. (2000). Constraint Satisfaction for Reconciling Heterogeneous Tree Databases. In: Ibrahim, M., Küng, J., Revell, N. (eds) Database and Expert Systems Applications. DEXA 2000. Lecture Notes in Computer Science, vol 1873. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-44469-6_58

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  • DOI: https://doi.org/10.1007/3-540-44469-6_58

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  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-67978-3

  • Online ISBN: 978-3-540-44469-5

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