Abstract
We propose an ontology of the brain cortex anatomy representing both numeric and symbolic knowledge. Implementation with web technologies facilitates the ontology’s dissemination and reuse in different application contexts. This model references the main terminological sources and can be integrated into larger scale models. It was instantiated as an XML file encompassing anatomical features of the frontal, temporal and parietal lobes. A standalone Java application and an HTML based one have been developed in order to illustrate the knowledge base flexibility. They are both fully interactive with 3D VRML scenes representing the shapes of brain sulci.
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Ono M, Kubik S, Abernathey C. In: Atlas of the Cerebral Sulci. Georg Thieme Verlag ed. Thieme Medical Publishers, Inc. 5New-York. 1990.
Duvernoy HM. In: The Human Brain: Surface, Three-Dimensional Sectional Anatomy and MRI. Springer-Verlag, Wien New-York. 1991.
Talairach J, Tournoux P. In: Co-Planar Stereotactic Atlas of the Human Brain. Georg Thieme Verlag ed. Thieme Medical Publishers, Inc. New-York. 1988.
Nowinski WL, Fang A, Nguyen BT, Raphel JK, L Jagannathan, R Raghavan, RN Brian, GA Miller. Multiple Brain Atlas Database and Atlas-Based Neuroimaging System. Computer Aided Surgery. 1997 2:42–66.
Pommert A, Schubert R, Riemer M, Schiemann T, Tiede U, Höhne KH. Symbolic Modeling of Human Anatomy for Visualization and Simulation. In: Visualization in Biomedical Computing RA Robb ed., Proc. SPIE 2359, Rochester, MN. 1994. 412–423.
Kikinis R, Shenton ME, Iosifescu DV, McCarley RW, Saiviroonporn P, Hokama HH, Robatino A, Metclaf D, Wible CG, Portas CM, Donnino RM, Jolesz FA. A Digital Brain Atlas for Surgical Planning, Model-Driven Segmentation, and Teaching. IEEE Transactions on Visualization and Computer Graphics. Sept 1996 Vol2 Num3. 232–241.
National Library of Medicine.Overview of the UMLS Project. In: CDROM Documentation. 2–16.
Bowden DM, Martin RF. NeuroNames Brain Hierarchy. Neuroimage. 1995, 2. 63–83.
RPRC Neurosciences Division, University of Washington, Seattle (WA). NeuroNames Template Atlas Homepage. http://rprcsgi.rprc.washington.edu/neuronames/
Structural Information Group, University of Washington, Seattle (WA). The Digital Anatomist Project. http://sig.biostr.washington.edu/projects/da/
Rosse C, Mejino JL, Modayur BR, Jakobovitz R, Hinshaw KP, Brinkley JF. Motivation and Organizational Principles for Anatomical Knowledge Representation. JAMIA. Jan–Feb 1998 volume 5 number 1. 17–40.
Rector A, Gangemi A, Galeazzi E, Glowinski AJ, Rossi-Mori A. The GALEN Model Schemata for Anatomy: Towards a re-usable Application-Independant model of Medical Concepts. Proceedings of Medical Informatics in Europe MIE94. 229–233.
Rector A, Zanstra PE, Solomon WD, Rogers JE, Baud R, Ceusters W, Claassen W, Kirby J, Rodrigues JM, Rossi-Mori A, van der Haring EJ, Wagner J. Reconciling Users’ Needs and Formal Requirements: Issues in Developping a Reusable Ontology for Medicine. IEEE Transactions on Information Technology in Biomedicine. Dec. 1998. Vol 2 Num 4. 229–242.
Gibaud B, Garlatti S, Barillot C, Faure E. Computerized brain atlases as decision support systems: a methodological approach. Artificial Intelligence in Medicine. 1998, 14. 83–100.
Szikla G, Bouvier G, Hori T, Petrov V. In: Angiography of the Human Brain Cortex. Spinger-Verlag ed. Berlin Heidelberg New-York. 1977.
Bosworth A, Layman A, Rys M. Serialising Graphs of Data in XML. The GCA XML Europe 99 Conference Proceedings Granada, Spain. May 1999. (http://www.biztalk.org/Resources/canonical.asp).
Le Goualher G, Barillot C, Bizais Y. Modeling cortical sulci with active ribbons. Int. J. of Pattern Recognition and Artificial Intelligence. 1997. Vol.11, num8. 1295–1315.
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Dameron, O., Gibaud, B., Morandi, X. (2001). Numeric and Symbolic Knowledge Representation of Cortex Anatomy Using Web Technologies. In: Quaglini, S., Barahona, P., Andreassen, S. (eds) Artificial Intelligence in Medicine. AIME 2001. Lecture Notes in Computer Science(), vol 2101. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-48229-6_49
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DOI: https://doi.org/10.1007/3-540-48229-6_49
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