Skip to main content

A Medical Ontology Library That Integrates the UMLS Metathesaurus™

  • Conference paper
  • First Online:
Artificial Intelligence in Medicine (AIMDM 1999)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 1620))

Abstract

Paper-based terminology systems cannot satisfy anymore the new desiderata of healthcare information systems: the demand for re-use and sharing of patient data, their transmission and the need of semantic-based criteria for purposive statistical aggregation. The unambiguous communication of complex and detailed medical concepts is now a crucial feature of medical information systems. Ontologies can support a more effective data and knowledge sharing in medicine. In this paper we survey the ontological analysis performed on the top-levels of some important medical terminology systems (an outcome of the ONIONS methodology) and we sketch out the ontological analysis performed on the UMLS Metathesaurus™. We show the convenience of an ontological approach in dealing with the different conceptualizations behind medical terminologies and the polysemy of terms. The multiple classification in UMLS is shown to be a phenomenon of polysemy and not one of multiple subsumption.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Guarino N (ed.), Formal Ontology in Information Systems, Amsterdam, IOS-Press, 1998.

    Google Scholar 

  2. Goñi A, Mena E, Illaramendi A, “Querying Heterogeneous and Distributed Data Repositories Using Ontologies”, in Info. Modeling and Knowledge Bases IX, Amsterdam, IOS, 1998.

    Google Scholar 

  3. Guarino N, Formal Ontology and Information Systems, in [1].

    Google Scholar 

  4. Sowa J, communication to the ontology-std mailing list, 1997.

    Google Scholar 

  5. Rothenfluh TE, Gennari JH, Eriksson H, Puerta AR, Tu SW, Musen MA, Reusable Ontologies, Knowledge-Acquisition Tools, and Performance Systems: PROTEGE-II Solutions to Sisyphus-2. International Journal of Human-Computer Studies, 44, 1996.

    Google Scholar 

  6. National Library of Medicine, UMLS Knowledge Sources, 1997 edition, available from the NLM, Bethesda, Maryland.

    Google Scholar 

  7. Guarino N, Carrara M, Giaretta P “An Ontology of Meta-Level Categories” In J Doyle, E Sandewall and P Torasso (eds.), Principles of Knowledge Representation and Reasoning: Proc. of KR94. San Mateo, CA, Morgan Kaufmann, 1994.

    Google Scholar 

  8. van Heijst G, Falasconi S, Abu-Hanna A, Schreiber G, and Stefanelli M, A case study in ontology library construction. Artificial Intelligence in Medicine, 1995, 227–255.

    Google Scholar 

  9. Steve G, Gangemi A, Pisanelli DM, “Integrating Medical Terminologies with ONIONS Methodology”, in Kangassalo H, Charrel JP (Eds.) Information Modeling and Knowledge Bases VIII, Amsterdam, IOS Press 1998.

    Google Scholar 

  10. Coté RA, Rothwell DJ, Brochu L, Eds. SNOMED International (3rd ed.), Northfield, Ill, College of American Pathologists, 1994.

    Google Scholar 

  11. Gabrieli E, “A New Electronic Medical Nomenclature”, J. Medical Systems, 3, 1989.

    Google Scholar 

  12. WHO, International Classification of Diseases (10th revision), Geneva, WHO, 1994.

    Google Scholar 

  13. Rector A, Solomon WD, Nowlan WA, “A Terminology Server for Medical Language and Medical Information Systems”, Methods of Information in Medicine, 34, 1995.

    Google Scholar 

  14. Pisanelli DM, Gangemi A, Steve G, “WWW-available Conceptual Integration of Medical Terminologies: the ONIONS Experience”, Proc. of AMIA 97 Conference, 1997.

    Google Scholar 

  15. Gangemi A, Pisanelli DM, Steve G, “Ontology Integration: Experiences with Medical Terminologies”, in [1].

    Google Scholar 

  16. MacGregor RM, “A Description Classifier for the Predicate Calculus” Proc. AAAI 94, 1994.

    Google Scholar 

  17. Humphreys BL, Lindberg DA, “The Unified Medical Language System Project”, Proc. of MEDINFO 92, Amsterdam, Elsevier, 1992.

    Google Scholar 

  18. Gangemi A, Pisanelli DM, Steve G, “Ontologizing UMLS”, ITBM-CNR TR 0198A, 1998.

    Google Scholar 

  19. Pisanelli DM, Gangemi A, Steve G, “An Ontological Analysis of the UMLS Methatesaurus”, Proc. of AMIA 98 Conference, 1998.

    Google Scholar 

  20. http://www.mwsearch.com

  21. http://igm.nlm.nih.gov

  22. Tuttle MS, Chute MD, Safran C, Abelson DJ, Campbell KE, Panel: Enterprise Experience with a Reusable Vocabulary Component, Proc. of AMIA 98 Conference, 1998.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1999 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Pisanelli, D.M., Gangemi, A., Steve, G. (1999). A Medical Ontology Library That Integrates the UMLS Metathesaurus™. In: Horn, W., Shahar, Y., Lindberg, G., Andreassen, S., Wyatt, J. (eds) Artificial Intelligence in Medicine. AIMDM 1999. Lecture Notes in Computer Science(), vol 1620. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-48720-4_26

Download citation

  • DOI: https://doi.org/10.1007/3-540-48720-4_26

  • Published:

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-66162-7

  • Online ISBN: 978-3-540-48720-3

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics