Abstract
We presented a parallel simulation environment for polymers, DNA and protein molecular chain simulations. The system is intended to help automatically parallelise computer simulations of complex polymers, DNA and protein molecules. In this paper we look at a load balancing algorithm for a class of computational problems where the topology of the problem is important, as well as just the dynamic problem structure. We study the algorithm and find the crossover points when it is beneficial to apply the algorithm. Both a theoretical model and experimental data from an implementation on a Cray T3D are used.
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© 1996 Springer-Verlag Berlin Heidelberg
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Hegarty, D.F., Kechadi, M.T., Dawson, K.A. (1996). On the crossover points for dynamic load balancing of long-chained molecules. In: Waśniewski, J., Dongarra, J., Madsen, K., Olesen, D. (eds) Applied Parallel Computing Industrial Computation and Optimization. PARA 1996. Lecture Notes in Computer Science, vol 1184. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-62095-8_41
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DOI: https://doi.org/10.1007/3-540-62095-8_41
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