Skip to main content

Modular and Flexible Tangible Molecular Interface for Interactive Molecular Simulation Based on Internet of Things Approach

  • Conference paper
  • First Online:
Virtual Reality and Augmented Reality (EuroVR 2019)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 11883))

Included in the following conference series:

  • 1636 Accesses

Abstract

Rational Drug Design, is an approach based on detailed knowledge of molecular interactions and dynamic of bio-molecules, focused on rationally constructed new drugs, as opposed to conventional and empirical approaches. These Rational Drug Design approaches involve designing new digital and interactive tools that take into account unconventional physical laws at nanoscopic scale using molecular simulations. However, many advanced interactive devices, such as haptic devices for manipulating and steering molecular models in silico especially to support protein docking activities, are not well-adapted to consider the numerous degrees of freedom and flexibility of bio-molecules. In this paper, we propose to address this issue by implementing an innovative approach benefiting from a physical, modular and articulated molecular model augmented by an Internet Of Thing approach, to create, design and steer its in silico twin model through a tangible molecular interface.

Supported by Farman Institute (through the project BIOTIN’IT).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 59.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 74.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Gillet, A., Sanner, M., Stoffler, D., Olson, A.: Tangible augmented interfaces for structural molecular biology. IEEE Comput. Graphics Appl. 25(2), 13–17 (2005)

    Article  Google Scholar 

  2. Gillet, A., Sanner, M., Stoffler, D., Olson, A.: Tangible interfaces for structural molecular biology. Structure 13(3), 483–491 (2005)

    Article  Google Scholar 

  3. Chakraborty, P., Zuckermann, R.N.: Coarse-grained, foldable, physical model of the polypeptide chain. Proc. Natl. Acad. Sci. 110(33), 13368–13373 (2013)

    Article  Google Scholar 

  4. Martinez, X., Férey, N., Vézien, J.-M., Bourdot, P.: 3D reconstruction with a markerless tracking method of flexible and modular molecular physical models: towards tangible interfaces. J. Virtual Reality Broadcast. 14(2) (2019)

    Google Scholar 

  5. Jacobson, A., Panozzo, D., Glauser, O., Pradalier, C., Hilliges, O., Sorkine-Hornung, O.: Tangible and modular input device for character articulation. ACM Trans. Graph. (TOG) 33(4), 82 (2014)

    Article  Google Scholar 

  6. Atmel. ATMega328p Datasheet, January 2015. https://www.sparkfun.com/datasheets/Components/SMD/ATMega328.pdf

  7. Nordic Semiconductor. ATMega328p Datasheet, March 2008. https://www.sparkfun.com/datasheets/Components/SMD/nRF24L01Pluss_Preliminary_Product_Specification_v1_0.pdf

  8. Atmel. Bootloader. https://www.arduino.cc/en/Hacking/Bootloader?from=Tutorial.Bootloader

  9. TMHr20. Optimized High Speed Driver for nRF24L01(+) 2.4G Hz Wireless Transceiver, March 2014. http://tmrh20.github.io/RF24/

  10. Atmel. SPI library. https://www.arduino.cc/en/Reference/SPI

  11. MySensors Team. MySensors: home automation and Internet of Things, 23 March 2014. https://www.mysensors.org/

  12. Millervet. NRF24L01+ Multiceiver Network (2014). https://www.instructables.com/id/NRF24L01-Multiceiver-Network/

  13. Dejan Nedelkovski. NRF24L01+ Tree Network, September 2018. https://howtomechatronics.com/author/howtom12_wp/

  14. MySensors Team. MYSbootloader, 1 February 2015. https://github.com/mysensors/MySensorsBootloaderRF24

  15. MySensors Team. FOTA (Wireless Programming): Firmware Over the Air (2016). https://www.mysensors.org/about/fota

  16. Lv, Z., Tek, A., Da Silva, F., Empereur-Mot, C., Chavent, M., Baaden, M.: Game on, science-how video game technology may help biologists tackle visualization challenges. PLoS ONE 8(3), e57990 (2013)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Bastien Vincke .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Vincke, B., Ghaoui, M.A., Férey, N., Martinez, X., Brochot, L. (2019). Modular and Flexible Tangible Molecular Interface for Interactive Molecular Simulation Based on Internet of Things Approach. In: Bourdot, P., Interrante, V., Nedel, L., Magnenat-Thalmann, N., Zachmann, G. (eds) Virtual Reality and Augmented Reality. EuroVR 2019. Lecture Notes in Computer Science(), vol 11883. Springer, Cham. https://doi.org/10.1007/978-3-030-31908-3_2

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-31908-3_2

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-31907-6

  • Online ISBN: 978-3-030-31908-3

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics