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Neural Architecture Search for Optimizing Deep Belief Network Models of fMRI Data

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Multiscale Multimodal Medical Imaging (MMMI 2019)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 11977))

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Abstract

It has been shown that deep neural networks are powerful and flexible models that can be applied on fMRI data with superb representation ability over traditional methods. However, a new challenge of neural network architecture design has also attracted attention: due to the high dimension of fMRI volume images, the manual process of network model design is very time-consuming and error prone. To tackle this problem, we proposed a Particle Swarm Optimization (PSO) based neural architecture search (NAS) framework for a deep belief network (DBN) that models volumetric fMRI data, named NAS-DBN. The core idea is that the particle swarm in our NAS framework can temporally evolve and finally converge to a feasible optimal solution. Experimental results showed that the proposed NAS-DBN framework can find robust architecture with minimal testing loss. Furthermore, we compared functional brain networks derived by NAS-DBN with general linear model (GLM), and the results demonstrated that the NAS-DBN is effective in modeling volumetric fMRI data.

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References

  1. Logothetis, N.K.: What we can do and what we cannot do with fMRI. Nature 453(7197), 869 (2008)

    Article  Google Scholar 

  2. Beckmann, C.F., Smith, S.M.: Probabilistic independent component analysis for functional magnetic resonance imaging. IEEE Trans. Med. Imaging 23(2), 137–152 (2004)

    Article  Google Scholar 

  3. Beckmann, C.F., Jenkinson, M., Smith, S.M.: General multilevel linear modeling for group analysis in FMRI. Neuroimage 20(2), 1052–1063 (2003)

    Article  Google Scholar 

  4. Lv, J., Jiang, X., Li, X., Zhu, D., Zhang, S., Zhao, S., et al.: Holistic atlases of functional networks and interactions reveal reciprocal organizational architecture of cortical function. IEEE Trans. Biomed. Eng. 62(4), 1120–1131 (2015)

    Article  Google Scholar 

  5. Zoph, B., Le, Q.V.: Neural architecture search with reinforcement learning (2016)

    Google Scholar 

  6. Abraham, A., Pedregosa, F., Eickenberg, M., et al.: Machine learning for neuroimaging with scikit-learn. Front. Neuroinformatics 8, 14 (2014)

    Article  Google Scholar 

  7. Kennedy, J.: Particle swarm optimization. Encycl. Mach. Learn. 4, 760–766 (2010)

    Google Scholar 

  8. Barch, D.M., Burgess, G.C., Harms, M.P., Petersen, S.E., Schlaggar, B.L., Corbetta, M., et al.: Function in the human connectome: task-fMRI and individual differences in behavior. Neuroimage 80, 169–189 (2013)

    Article  Google Scholar 

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Acknowledgement

We thank all investigators contributing data to the HCP project. Bao Ge was supported by NSFC61976131.

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Correspondence to Bao Ge .

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Qiang, N., Ge, B., Dong, Q., Ge, F., Liu, T. (2020). Neural Architecture Search for Optimizing Deep Belief Network Models of fMRI Data. In: Li, Q., Leahy, R., Dong, B., Li, X. (eds) Multiscale Multimodal Medical Imaging. MMMI 2019. Lecture Notes in Computer Science(), vol 11977. Springer, Cham. https://doi.org/10.1007/978-3-030-37969-8_4

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  • DOI: https://doi.org/10.1007/978-3-030-37969-8_4

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-37968-1

  • Online ISBN: 978-3-030-37969-8

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