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Recent Progresses in the Combinatorial and Algorithmic Study of Rooted Phylogenetic Networks

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WALCOM: Algorithms and Computation (WALCOM 2020)

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Abstract

Galled trees are studied as a recombination model in theoretical population genetics. Tree-child networks, reticulation-visible networks and tree-based networks can be considered as the generalizations of galled trees through relaxing a structural condition. Although these networks are simple, their topological structures have yet to be fully understood. Here, recent progresses in the tree and cluster containment problems and network counting problems are summarized.

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Acknowledgments

The author thanks B. DasGupta, P. Gambette, A. Gunawan, A. Labarre, S. Vialette, BX Liu and HW Yan for their collaboration in studying the combinatorial and algorithmic aspects of phylogenetic networks. This work was supported by Singapore-France Institute Merlion project and Singapore’s Ministry of Education Academic Research Fund Tier-1 [grant R-146-000-238-114].

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Authors and Affiliations

  1. Department of Mathematics, National University of Singapore, Singapore, 119076, Singapore

    Louxin Zhang

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  1. Louxin Zhang
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Correspondence to Louxin Zhang .

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Editors and Affiliations

  1. Department of CSE, BUET, Dhaka, Bangladesh

    M. Sohel Rahman

  2. Mathematical Informatics, University of Tokyo, Tokyo, Japan

    Kunihiko Sadakane

  3. School of Computing, National University of Singapore, Singapore, Singapore

    Wing-Kin Sung

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Zhang, L. (2020). Recent Progresses in the Combinatorial and Algorithmic Study of Rooted Phylogenetic Networks. In: Rahman, M., Sadakane, K., Sung, WK. (eds) WALCOM: Algorithms and Computation. WALCOM 2020. Lecture Notes in Computer Science(), vol 12049. Springer, Cham. https://doi.org/10.1007/978-3-030-39881-1_3

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  • DOI: https://doi.org/10.1007/978-3-030-39881-1_3

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-39880-4

  • Online ISBN: 978-3-030-39881-1

  • eBook Packages: Computer ScienceComputer Science (R0)

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