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3DCNN for Pulmonary Nodule Segmentation and Classification

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Image Analysis and Recognition (ICIAR 2020)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 12132))

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Abstract

Lung cancer is the leading cause of cancer-related death. Early stage lung cancer detection using computed tomography (CT) could prevent patient death effectively. However, millions of CT scans will have to be analyzed thoroughly worldwide, which represents an enormous burden for radiologists. Therefore, there is significant interest in the development of computer algorithms to optimize this clinical process.

In the paper, we developed an algorithm for segmentation and classification of Pulmonary Nodule. Firstly, we established a CT pulmonary nodule annotation database using three major public databases. Secondly, we adopt state-of-the-art algorithms of deep learning method in medical imaging processing. The proposed algorithm shows the superior performance on the LNDb dataset. We got an outstanding accuracy in the segmentation and classification tasks which reached 77.8% (Dice Coefficient), 78.7% respectively.

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References

  1. Torre, L.A., et al.: Lung Cancer Statistics. In: Ahmad, A., Gadgeel, S. (eds.) Lung Cancer and Personalized Medicine, pp. 1–19. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-24223-1

    Chapter  Google Scholar 

  2. ur Rehman, M.Z., et al.: An appraisal of nodules detection techniques for lung cancer in CT images. Biomed. Signal Process. Control, 41, 140–151 (2018)

    Google Scholar 

  3. Litjens, G., Kooi, T., Bejnordi, B.E., et al.: A survey on deep learning in medical image analysis. Medical Image Analysis 42, 60–88 (2017)

    Article  Google Scholar 

  4. Taghanaki, S.A., Abhishek, K., Cohen, J.P., et al.: Deep semantic segmentation of natural and medical images: a review (2019). arXiv preprint arXiv:1910.07655

  5. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. arXiv (2015): 1505.04597. http://arxiv.org/abs/1505.04597. arXiv: 1505.04597

  6. Cheplygina, V., de Bruijne, M., Pluim, J.P.: Not-so-supervised: a survey of semi-supervised, multi-instance, and transfer learning in medical image analysis. Med. Image Anal. 54, 280–296 (2019)

    Article  Google Scholar 

  7. MacMahon, H., Naidich, D.P., Goo, J.M., et al.: Guidelines for management of incidental pulmonary nodules detected on CT images: from the Fleischner Society 2017. Radiology 284(1), 228–243 (2017)

    Article  Google Scholar 

  8. Pedrosa, J., Aresta, G., Ferreira, C., et al.: Lndb: a lung nodule database on computed tomography. arXiv preprint arXiv:1911.08434 (2019)

  9. Setio, A.A.A., et al.: Validation, comparison, and combination of algorithms for automatic detection of pulmonary nodules in computed tomography images: the LUNA16 challenge. Med. Image Anal. 42, 1–13 (2017)

    Article  Google Scholar 

  10. TIANCHI. https://tianchi.aliyun.com/competition/entrance/231601/introduction

  11. Armato III, S.G., McLennan, G., Bidaut, L., et al.: The lung image database consortium (lidc) and image database resource initiative (idri): a completed reference database of lung nodules on ct scans. Med. Phys. 38(2), 915–931 (2011)

    Article  Google Scholar 

  12. Zhou, Z., et al.: Models Genesis: Generic Autodidactic Models for 3D Medical Image Analysis. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11767, pp. 384–393. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32251-9_42

    Chapter  Google Scholar 

  13. Chen, H., Dou, Q., Wang, X., Qin, J., Cheng, J.C.Y., Heng, P.A.: 3D fully convolutional networks for intervertebral disc localization and segmentation. In: Zheng, G., Liao, H., Jannin, P., Cattin, P., Lee, S. (eds.) MIAR 2016. LNCS, vol. 9805, pp. 375–382. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-43775-0_34

    Chapter  Google Scholar 

  14. Baumgartner, C.F., Koch, L.M., Pollefeys, M., et al.: An exploration of 2D and 3D deep learning techniques for cardiac MR image segmentation. In: Pop, M., et al. (eds.) STACOM 2017. LNCS, vol. 10663, pp. 111–119. Springer, Cham (2018). https://doi.org/10.1007/978-3-319-75541-0_12

    Chapter  Google Scholar 

  15. Zhou, X., Takayama, R., Wang, S., et al.: Deep learning of the sectional appearances of 3D CT images for anatomical structure segmentation based on an FCN voting method. Med. Phys. 44(10), 5221–5233 (2017)

    Article  Google Scholar 

  16. Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, Olaf: 3D U-Net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424–432. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_49

    Chapter  Google Scholar 

  17. Spitzer, R.L., Cohen, J., Fleiss, J.L., et al.: Quantification of agreement in psychiatric diagnosis. Arch. Gen. Psychiatry 17, 83–87 (1967)

    Article  Google Scholar 

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Correspondence to Zhongwei Sun .

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Tian, Z., Jia, Y., Men, X., Sun, Z. (2020). 3DCNN for Pulmonary Nodule Segmentation and Classification. In: Campilho, A., Karray, F., Wang, Z. (eds) Image Analysis and Recognition. ICIAR 2020. Lecture Notes in Computer Science(), vol 12132. Springer, Cham. https://doi.org/10.1007/978-3-030-50516-5_34

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  • DOI: https://doi.org/10.1007/978-3-030-50516-5_34

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-50515-8

  • Online ISBN: 978-3-030-50516-5

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