Skip to main content

Motif Discovery Using Similarity-Constraints Deep Neural Networks

  • Conference paper
  • First Online:
Database Systems for Advanced Applications (DASFAA 2020)

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 12112))

Included in the following conference series:

  • 2793 Accesses

Abstract

Discovering frequently occurring patterns (or motifs) in time series has many real-life applications in financial data, streaming media data, meteorological data, and sensor data. It is challenging to provide efficient motif discovery algorithms when the time series is big. Existing motif discovery algorithms trying to improve the performance can be classified into two categories: (i) reducing the computation cost but keeping the original time series dimensions; and (ii) applying feature representation models to reduce the dimensions. However, both of them have limitations when scaling to big time series. The performance of the first category algorithms heavily rely on the size of the dimension of the original time series, which performs bad when the time series is big. The second category algorithms cannot guarantee the original similarity properties, which means originally similar patterns may be identified as dissimilar. To address the limitations, we provide an efficient motif discovery algorithm, called FastM, which can reduce dimensions and maintain the similarity properties. FastM extends the deep neural network stacked AutoEncoder by introducing new central loss functions based on labels assigned by clustering algorithms. Comprehensive experimental results on three real-life datasets demonstrate both the high efficiency and accuracy of FastM.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    https://www.cs.ucr.edu/~eamonn/time_series_data.

  2. 2.

    https://www.tensorflow.org.

  3. 3.

    https://www.cs.ucr.edu/~eamonn/MatrixProfile.html.

References

  1. Buhler, J., Tompa, M.: Finding motifs using random projections. J. Comput. Biol. 9(2), 225–242 (2000)

    Google Scholar 

  2. Castro, N., Azevedo, P.J.: Multiresolution motif discovery in time series. In: SDM, pp. 665–676 (2010)

    Google Scholar 

  3. Chu, W., Cai, D.: Stacked similarity-aware autoencoders. In: IJCAI, pp. 1561–1567 (2017)

    Google Scholar 

  4. Gao, Y., Lin, J.: Efficient discovery of variable-length time series motifs with large length range in million scale time series. CoRR abs/1802.04883 (2018)

    Google Scholar 

  5. Gao, Y., Lin, J., Rangwala, H.: Iterative grammar-based framework for discovering variable-length time series motifs. In: ICMLA, pp. 7–12 (2016)

    Google Scholar 

  6. Lam, H.T., Calders, T., Pham, N.: Online discovery of top-k similar motifs in time series data. In: ICDM, pp. 1004–1015 (2010)

    Google Scholar 

  7. Li, Y., Lin, J., Oates, T.: Visualizing variable-length time series motifs. In: ICDM, pp. 895–906 (2012)

    Google Scholar 

  8. Li, Y., U, L.H., Yiu, M.L., Gong, Z.: Quick-motif: an efficient and scalable framework for exact motif discovery. In: ICDE, pp. 579–590 (2015)

    Google Scholar 

  9. Lin, J., Keogh, E., Li, W., Lonardi, S.: Experiencing sax: a novel symbolic representation of time series. Data Min. Knowl. Discov. 15, 107–144 (2007). https://doi.org/10.1007/s10618-007-0064-z

    Article  MathSciNet  Google Scholar 

  10. Lin, J., Keogh, E., Lonardi, S., Patel, P.: Finding motifs in time series. In: Proceedings of 2nd Workshop on Temporal Data Mining at KDD, pp. 53–68 (2002)

    Google Scholar 

  11. Lin, J., Li, Y.: Finding approximate frequent patterns in streaming medical data. In: CBMS, pp. 13–18 (2010)

    Google Scholar 

  12. Lu, J., Lin, C., Wang, W., Li, C., Wang, H.: String similarity measures and joins with synonyms. In: SIGMOD, pp. 373–384 (2013)

    Google Scholar 

  13. Mueen, A.: Enumeration of time series motifs of all lengths. In: ICDM, pp. 547–556 (2013)

    Google Scholar 

  14. Mueen, A., Keogh, E.J., Zhu, Q., Cash, S., Westover, M.B.: Exact discovery of time series motifs. In: SDM, pp. 473–484 (2009)

    Google Scholar 

  15. Narang, A., Bhattacherjee, S.: Real-time approximate range motif discovery & data redundancy removal algorithm. In: EDBT, pp. 485–496 (2011)

    Google Scholar 

  16. Nevill-Manning, C.G., Witten, I.H.: Identifying hierarchical structure in sequences: a linear-time algorithm. J. Artif. Intell. Res. 7, 67–82 (1997)

    Article  Google Scholar 

  17. Nunthanid, P., Niennattrakul, V., Ratanamahatana, C.A.: Discovery of variable length time series motif. In: EEE, pp. 472–475 (2011)

    Google Scholar 

  18. Patel, P., Keogh, E.J., Lin, J., Lonardi, S.: Mining motifs in massive time series databases. In: ICDM, pp. 370–377 (2002)

    Google Scholar 

  19. Rong, C., Lin, C., Silva, Y.N., Wang, J., Lu, W., Du, X.: Fast and scalable distributed set similarity joins for big data analytics. In: ICDE, pp. 1059–1070 (2017)

    Google Scholar 

  20. Senin, P., et al.: GrammarViz 2.0: a tool for grammar-based pattern discovery in time series. In: Calders, T., Esposito, F., Hüllermeier, E., Meo, R. (eds.) ECML PKDD 2014. LNCS (LNAI), vol. 8726, pp. 468–472. Springer, Heidelberg (2014). https://doi.org/10.1007/978-3-662-44845-8_37

    Chapter  Google Scholar 

  21. Tanaka, Y., Iwamoto, K., Uehara, K.: Discovery of time-series motif from multi-dimensional data based on MDL principle. Mach. Learn. 58(2–3), 269–300 (2005). https://doi.org/10.1007/s10994-005-5829-2

    Article  MATH  Google Scholar 

  22. Tang, H., Liao, S.S.: Discovering original motifs with different lengths from time series. Knowl. Based Syst. 21, 666–671 (2008)

    Article  Google Scholar 

  23. Wen, Y., Zhang, K., Li, Z., Qiao, Yu.: A discriminative feature learning approach for deep face recognition. In: Leibe, B., Matas, J., Sebe, N., Welling, M. (eds.) ECCV 2016. LNCS, vol. 9911, pp. 499–515. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46478-7_31

    Chapter  Google Scholar 

  24. Yeh, C.C.M., Yan, Z., Ulanova, L., Begum, N., Keogh, E.: Matrix profile i: All pairs similarity joins for time series: a unifying view that includes motifs, discords and shapelets. In: ICDM, pp. 1317–1322 (2016)

    Google Scholar 

  25. Yeh, C.-C.M., et al.: Time series joins, motifs, discords and shapelets: a unifying view that exploits the matrix profile. Data Min. Knowl. Disc. 32(1), 83–123 (2017). https://doi.org/10.1007/s10618-017-0519-9

    Article  MathSciNet  MATH  Google Scholar 

  26. Zhu, Y., Zimmerman, Z., Senobari, N.S., Yeh, C.M.: Matrix profile II: exploiting a novel algorithm and gpus to break the one hundred million barrier for time series motifs and joins. In: ICDM, pp. 739–748 (2016)

    Google Scholar 

Download references

Acknowledgment

This work was supported by the project of Natural Science Foundation of China (No.61402329) and the Natural Science Foundation of Tianjin(No.19JCYBJC15400, No.18JCYBJC15300).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Chunbin Lin .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2020 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Rong, C., Chen, Z., Lin, C., Wang, J. (2020). Motif Discovery Using Similarity-Constraints Deep Neural Networks. In: Nah, Y., Cui, B., Lee, SW., Yu, J.X., Moon, YS., Whang, S.E. (eds) Database Systems for Advanced Applications. DASFAA 2020. Lecture Notes in Computer Science(), vol 12112. Springer, Cham. https://doi.org/10.1007/978-3-030-59410-7_39

Download citation

Publish with us

Policies and ethics