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Multimodal Priors Guided Segmentation of Liver Lesions in MRI Using Mutual Information Based Graph Co-Attention Networks

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Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 (MICCAI 2020)

Abstract

Segmentation of focal liver lesions serves as an essential preprocessing step for initial diagnosis, stage differentiation, and post-treatment efficacy evaluation. Multimodal MRI scans (e.g., T1WI, T2WI) provide complementary information on liver lesions and is widely used for diagnosis. However, some modalities (e.g., T1WI) have high resolution but lack of important visual information (e.g., edge) belonged to other modalities (T2WI), it is significant to enhance tissue lesion quality in T1WI using other modality priors (T2WI) and improve segmentation performance. In this paper, we propose a graph learning based approach with the motivation of extracting modality-specific features efficiently and establishing the regional correspondence effectively between T1WI and T2WI. We first project deep features into a graph domain and employ graph convolution to propagate information across all regions for extraction of modality-specific features. Then we propose a mutual information based graph co-attention module to learn weight coefficients of one bipartite graph, which is constructed by the fully-connection of graphs with different modalities in the graph domain. At last, we get the final refined features for segmentation by re-projection and residual connection. We validate our method on a multimodal MRI liver lesion dataset. Experimental results show that the proposed approach achieves improvement of liver lesion segmentation in T1WI by learning guided features from multimodal priors (T2WI) compared to existing methods.

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References

  1. Forner, A., Reig, M., Bruix, J.: Hepatocellular carcinoma. Lancet (London, England) 391, 1301–1314 (2018). https://doi.org/10.1016/s0140-6736(18)30010-2

  2. Chen, C., Dou, Q., Jin, Y., Chen, H., Qin, J., Heng, P.-A.: Robust multimodal brain tumor segmentation via feature disentanglement and gated fusion. In: Shen, D., et al. (eds.) MICCAI 2019. Robust multimodal brain tumor segmentation via feature disentanglement and gated fusion, vol. 11766, pp. 447–456. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32248-9_50

    Chapter  Google Scholar 

  3. Chen, Y., Rohrbach, M., Yan, Z., Shuicheng, Y., Feng, J., Kalantidis, Y.: Graph-based global reasoning networks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 433–442 (2019)

    Google Scholar 

  4. Dolz, J., Desrosiers, C., Ayed, I.B.: IVD-Net: intervertebral disc localization and segmentation in MRI with a multi-modal UNet. In: Zheng, G., Belavy, D., Cai, Y., Li, S. (eds.) CSI 2018. LNCS, vol. 11397, pp. 130–143. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-13736-6_11

    Chapter  Google Scholar 

  5. Dolz, J., Gopinath, K., Yuan, J., Lombaert, H., Desrosiers, C., Ayed, I.B.: HyperDense-Net: a hyper-densely connected CNN for multi-modal image segmentation. IEEE Trans. Med. Imaging 38(5), 1116–1126 (2018)

    Article  Google Scholar 

  6. El-Serag, H.B.: Epidemiology of hepatocellular carcinoma. In: The Liver: Biology and Pathobiology, pp. 758–772 (2020)

    Google Scholar 

  7. Havaei, M., Guizard, N., Chapados, N., Bengio, Y.: HeMIS: hetero-modal image segmentation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 469–477. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_54

    Chapter  Google Scholar 

  8. Jansen, M.J., et al.: Liver segmentation and metastases detection in MR images using convolutional neural networks. J. Med. Imaging 6(4), 044003 (2019)

    Article  Google Scholar 

  9. Kipf, T.N., Welling, M.: Semi-supervised classification with graph convolutional networks. In: 5th International Conference on Learning Representations, ICLR 2017, Toulon, France, April 24–26, 2017, Conference Track Proceedings. OpenReview.net (2017). https://openreview.net/forum?id=SJU4ayYgl

  10. Li, Q., Han, Z., Wu, X.M.: Deeper insights into graph convolutional networks for semi-supervised learning. In: Thirty-Second AAAI Conference on Artificial Intelligence (2018)

    Google Scholar 

  11. Liang, X., Hu, Z., Zhang, H., Lin, L., Xing, E.P.: Symbolic graph reasoning meets convolutions. In: Advances in Neural Information Processing Systems, pp. 1853–1863 (2018)

    Google Scholar 

  12. Maes, F., Vandermeulen, D., Suetens, P.: Medical image registration using mutual information. Proc. IEEE 91(10), 1699–1722 (2003)

    Article  Google Scholar 

  13. Marstal, K., Berendsen, F., Staring, M., Klein, S.: SimpleElastix: a user-friendly, multi-lingual library for medical image registration. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, pp. 134–142 (2016)

    Google Scholar 

  14. Mazurowski, M.A., Buda, M., Saha, A., Bashir, M.R.: Deep learning in radiology: an overview of the concepts and a survey of the state of the art with focus on MRI. J. Magn. Reson. Imaging 49(4), 939–954 (2019)

    Article  Google Scholar 

  15. Sedghi, A., et al.: Semi-supervised image registration using deep learning. In: Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling, vol. 10951, p. 109511G. International Society for Optics and Photonics (2019)

    Google Scholar 

  16. Thekumparampil, K.K., Wang, C., Oh, S., Li, L.J.: Attention-based graph neural network for semi-supervised learning. arXiv preprint arXiv:1803.03735 (2018)

  17. Jansen, M.J., et al.: Liver segmentation and metastases detection in MR images using convolutional neural networks. J. Med. Imaging 6(4), 044003 (2019)

    Article  Google Scholar 

  18. Velickovic, P., Cucurull, G., Casanova, A., Romero, A., Liò, P., Bengio, Y.: Graph attention networks. In: 6th International Conference on Learning Representations, ICLR 2018, Vancouver, BC, Canada, April 30–May 3, 2018, Conference Track Proceedings. OpenReview.net (2018). https://openreview.net/forum?id=rJXMpikCZ

  19. Xiao, X., et al.: Radiomics-guided GAN for segmentation of liver tumor without contrast agents. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11765, pp. 237–245. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32245-8_27

    Chapter  Google Scholar 

  20. Zeng, Q., et al.: Liver segmentation in magnetic resonance imaging via mean shape fitting with fully convolutional neural networks. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11765, pp. 246–254. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32245-8_28

    Chapter  Google Scholar 

  21. Zhou, T., Ruan, S., Canu, S.: A review: deep learning for medical image segmentation using multi-modality fusion. Array, p. 100004 (2019)

    Google Scholar 

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Acknowledgements

This work was supported in part by Major Scientific Research Project of Zhejiang Lab under the Grant No. 2018DG0ZX01, and in part by the Grant-in Aid for Scientific Research from the Japanese Ministry for Education, Science, Culture and Sports (MEXT) under the Grant No. 18H03267 and No.17H00754.

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Correspondence to Ming Cai .

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Mo, S. et al. (2020). Multimodal Priors Guided Segmentation of Liver Lesions in MRI Using Mutual Information Based Graph Co-Attention Networks. In: Martel, A.L., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. MICCAI 2020. Lecture Notes in Computer Science(), vol 12264. Springer, Cham. https://doi.org/10.1007/978-3-030-59719-1_42

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  • DOI: https://doi.org/10.1007/978-3-030-59719-1_42

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