Skip to main content

PolypSeg: An Efficient Context-Aware Network for Polyp Segmentation from Colonoscopy Videos

  • Conference paper
  • First Online:
Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 (MICCAI 2020)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 12266))

Abstract

Polyp segmentation from colonoscopy videos is of great importance for improving the quantitative analysis of colon cancer. However, it remains a challenging task due to (1) the large size and shape variation of polyps, (2) the low contrast between polyps and background, and (3) the inherent real-time requirement of this application, where the segmentation results should be immediately presented to the doctors during the colonoscopy procedures for their prompt decision and action. It is difficult to develop a model with powerful representation capability, yielding satisfactory segmentation results in a real-time manner. We propose a novel and efficient context-aware network, named PolypSeg, in order to comprehensively address these challenges. The proposed PolypSeg consists of two key components: adaptive scale context module (ASCM) and semantic global context module (SGCM). The ASCM aggregates the multi-scale context information and takes advantage of an improved attention mechanism to make the network focus on the target regions and hence improve the feature representation. The SGCM enriches the semantic information and excludes the background noise in the low-level features, which enhances the feature fusion between high-level and low-level features. In addition, we introduce the deep separable convolution into our PolypSeg to replace the traditional convolution operations in order to reduce parameters and computational costs to make the PolypSeg run in a real-time manner. We conducted extensive experiments on a famous public available dataset for polyp segmentation task. Experimental results demonstrate that the proposed PolypSeg achieves much better segmentation results than state-of-the-art methods with a much faster speed.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 119.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 159.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    https://datasets.simula.no/kvasir-seg/.

References

  1. Akbari, M., et al.: Polyp segmentation in colonoscopy images using fully convolutional network. In: 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), pp. 69–72. IEEE (2018)

    Google Scholar 

  2. Brandao, P., et al.: Fully convolutional neural networks for polyp segmentation in colonoscopy. In: Medical Imaging 2017: Computer-Aided Diagnosis, vol. 10134, p. 101340F. International Society for Optics and Photonics (2017)

    Google Scholar 

  3. Cao, Y., Xu, J., Lin, S., Wei, F., Hu, H.: GCNet: non-local networks meet squeeze-excitation networks and beyond. In: Proceedings of the IEEE International Conference on Computer Vision Workshops (2019)

    Google Scholar 

  4. Chen, L.C., Papandreou, G., Kokkinos, I., Murphy, K., Yuille, A.L.: Deeplab: semantic image segmentation with deep convolutional nets, atrous convolution, and fully connected CRFs. IEEE Trans. Pattern Anal. Mach. Intell. 40(4), 834–848 (2017)

    Article  Google Scholar 

  5. Chollet, F.: Xception: Deep learning with depthwise separable convolutions. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 1251–1258 (2017)

    Google Scholar 

  6. Gross, S., et al.: Polyp segmentation in nbi colonoscopy. In: Meinzer, H.P., Deserno, T.M., Handels, H., Tolxdorff, T. (eds.) Bildverarbeitung für die Medizin 2009, pp. 252–256. Springer, Heidelberg (2009). https://doi.org/10.1007/978-3-540-93860-6_51

  7. Hu, J., Shen, L., Sun, G.: Squeeze-and-excitation networks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 7132–7141 (2018)

    Google Scholar 

  8. Jha, D., et al.: Resunet++: an advanced architecture for medical image segmentation. In: 2019 IEEE International Symposium on Multimedia (ISM), pp. 225–2255. IEEE (2019)

    Google Scholar 

  9. Kolligs, F.T.: Diagnostics and epidemiology of colorectal cancer. Visceral Med. 32(3), 158–164 (2016)

    Article  Google Scholar 

  10. Leufkens, A., Van Oijen, M., Vleggaar, F., Siersema, P.: Factors influencing the miss rate of polyps in a back-to-back colonoscopy study. Endoscopy 44(05), 470–475 (2012)

    Article  Google Scholar 

  11. Li, Q., et al.: Colorectal polyp segmentation using a fully convolutional neural network. In: 2017 10th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI), pp. 1–5. IEEE (2017)

    Google Scholar 

  12. Lin, M., Chen, Q., Yan, S.: Network in network. arXiv preprint arXiv:1312.4400 (2013)

  13. Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 3431–3440 (2015)

    Google Scholar 

  14. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

    Chapter  Google Scholar 

  15. Siegel, R.L., et al.: Colorectal cancer incidence patterns in the United States, 1974–2013. JNCI: J. Natl. Cancer Inst. 109(8) (2017)

    Google Scholar 

  16. Sun, X., Zhang, P., Wang, D., Cao, Y., Liu, B.: Colorectal polyp segmentation by u-net with dilation convolution. arXiv preprint arXiv:1912.11947 (2019)

  17. Yao, J., Miller, M., Franaszek, M., Summers, R.M.: Colonic polyp segmentation in CT colonography-based on fuzzy clustering and deformable models. IEEE Trans. Med. Imaging 23(11), 1344–1352 (2004)

    Article  Google Scholar 

  18. Yu, F., Koltun, V.: Multi-scale context aggregation by dilated convolutions. arXiv preprint arXiv:1511.07122 (2015)

Download references

Acknowledgement

This work was supported in part by grants from the National Natural Science Foundation of China (No. 61973221), the Natural Science Foundation of Guangdong Province, China (Nos. 2018A030313381 and 2019A1515011165), the Major Project or Key Lab of Shenzhen Research Foundation, China (Nos. JCYJ2016060 8173051207, ZDSYS201707311550233, KJYY201807031540021294 and JSGG201 805081520220065), the COVID-19 Prevention Project of Guangdong Province, China (No. 2020KZDZX1174), the Major Project of the New Generation of Artificial Intelligence (No. 2018AAA0102900) and the Hong Kong Research Grants Council (Project No. PolyU 152035/17E and 15205919).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Huisi Wu .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2020 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Zhong, J., Wang, W., Wu, H., Wen, Z., Qin, J. (2020). PolypSeg: An Efficient Context-Aware Network for Polyp Segmentation from Colonoscopy Videos. In: Martel, A.L., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. MICCAI 2020. Lecture Notes in Computer Science(), vol 12266. Springer, Cham. https://doi.org/10.1007/978-3-030-59725-2_28

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-59725-2_28

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-59724-5

  • Online ISBN: 978-3-030-59725-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics