Abstract
The challenge faced by the joint optic disc and optic cup segmentation is how to learn an efficient segmentation model with good performance. This paper proposes a method based on a new type of Skip-Link attention guidance network and polar transformation, called Skip-Link Attention Guidance Network (SLAG-CNN) model, which implements the simultaneous segmentation of the optic disc and optic cup. In SLAG-CNN, the Skip-Link Attention Gate (SLAG) module was first introduced, which was used as a sensitive extension path to transfer the semantic information and location information of the previous feature map. Each SLAG module of the SLAG-CNN model combines channel attention and spatial attention, and adds Skip-Link to form a new attention module to enhance the segmentation results. Secondly, multi-scale input images are constructed by spatial pyramid pooling. Finally, a weighted cross-entropy loss function is used at each side output layer to sum up to calculate the total model loss. On the DRISHTI-GS1 dataset, the joint optic disc and optic cup segmentation task proves the effectiveness of our proposed method.
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References
Singh, V.K., Rashwan, H.A., Saleh, A., et al.: Refuge Challenge 2018-Task 2: Deep Optic Disc and Cup Segmentation in Fundus Images Using U-Net and Multi-scale Feature Matching Networks. arXiv preprint arXiv:1807.11433 (2018)
Zhao, R., Liao, W., Zou, B., et al.: Weakly-supervised simultaneous evidence identification and segmentation for automated glaucoma diagnosis. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 33, pp. 809–816 (2019)
Ding, F., Yang, G., Liu, J., et al.: Hierarchical Attention Networks for Medical Image Segmentation. arXiv preprint arXiv:1911.08777 (2019)
Pinz, A., Bernogger, S., Datlinger, P., et al.: Mapping the human retina. IEEE Trans. Med. Imaging 17(4), 606–619 (1998)
Li, H., Chutatape, O.: Automated feature extraction in color retinal images by a model based approach. IEEE Trans. Biomed. Eng. 51(2), 246–254 (2004)
Bhuiyan, A., Kawasaki, R., Wong, T.Y., et al.: A new and efficient method for automatic optic disc detection using geometrical features. In: Dössel, O., Schlegel, W.C. (eds.) World Congress on Medical Physics and Biomedical Engineering, pp. 1131–1134. Springer, Heidelberg (2009). https://doi.org/10.1007/978-3-642-03882-2_301
Aquino, A., Gegúndez-Arias, M.E., Marín, D.: Detecting the optic disc boundary in digital fundus images using morphological, edge detection, and feature extraction techniques. IEEE Trans. Med. Imaging 29(11), 1860–1869 (2010)
Roychowdhury, S., Koozekanani, D.D., Kuchinka, S.N., et al.: Optic disc boundary and vessel origin segmentation of fundus images. IEEE J. Biomed. Health Inf. 20(6), 1562–1574 (2015)
Zhou, W., Wu, C., Chen, D., et al.: Automatic microaneurysm detection using the sparse principal component analysis-based unsupervised classification method. IEEE Access 5, 2563–2572 (2017)
Zhou, W., Wu, C., Yi, Y., et al.: Automatic detection of exudates in digital color fundus images using superpixel multi-feature classification. IEEE Access 5, 17077–17088 (2017)
Sudre, C.H., Li, W., Vercauteren, T., Ourselin, S., Jorge Cardoso, M.: Generalised dice overlap as a deep learning loss function for highly unbalanced segmentations. In: Cardoso, M.J., et al. (eds.) DLMIA/ML-CDS -2017. LNCS, vol. 10553, pp. 240–248. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-67558-9_28
Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 3431–3440 (2015)
Kim, J., Tran, L., Chew, E.Y., et al.: Optic disc and cup segmentation for glaucoma characterization using deep learning. In: 2019 IEEE 32nd International Symposium on Computer-Based Medical Systems (CBMS), pp. 489–494. IEEE (2019)
Bi, L., Guo, Y., Wang, Q., et al.: Automated Segmentation of the Optic Disk and Cup using Dual-Stage Fully Convolutional Networks. arXiv preprint arXiv:1902.04713 (2019)
Shankaranarayana, S.M., Ram, K., Mitra, K., et al.: Fully convolutional networks for monocular retinal depth estimation and optic disc-cup segmentation. IEEE J. Biomed. Health Inf. 23(4), 1417–1426 (2019)
Gao, Y., Yu, X., Wu, C., et al.: Accurate optic disc and cup segmentation from retinal images using a multi-feature based approach for glaucoma assessment. Symmetry 11(10), 1267 (2019)
Gu, Z., et al.: DeepDisc: optic disc segmentation based on atrous convolution and spatial pyramid pooling. In: Stoyanov, D., et al. (eds.) OMIA/COMPAY -2018. LNCS, vol. 11039, pp. 253–260. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00949-6_30
Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28
Sevastopolsky, A.: Optic disc and cup segmentation methods for glaucoma detection with modification of U-Net convolutional neural network. Pattern Recogn. Image Anal. 27(3), 618–624 (2017)
Al-Bander, B., Williams, B.M., Al-Nuaimy, W., et al.: Dense fully convolutional segmentation of the optic disc and cup in colour fundus for glaucoma diagnosis. Symmetry 10(4), 87 (2018)
Fu, H., Cheng, J., Xu, Y., et al.: Joint optic disc and cup segmentation based on multi-label deep network and polar transformation. IEEE Trans. Med. Imaging 37(7), 1597–1605 (2018)
Thakur, N., Juneja, M.: Optic disc and optic cup segmentation from retinal images using hybrid approach. Expert Syst. Appl. 127, 308–322 (2019)
Chakravarty, A., Sivaswamy, J.: RACE-net: a recurrent neural network for biomedical image segmentation. IEEE J. Biomed. Health Inf. 23(3), 1151–1162 (2018)
Chen, K., Wang, J., Chen, L.C., et al.: ABC-CNN: an attention based convolutional neural network for visual question answering. arXiv preprint arXiv:1511.05960 (2015)
Woo, S., Park, J., Lee, J.Y., et al.: CBAM: Convolutional Block Attention Module (2018)
Hu, J., Shen, L., Sun, G.: Squeeze-and-excitation networks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 7132–7141 (2018)
Sivaswamy, J., Krishnadas, S.R., Joshi, G.D., et al.: Drishti-GS: retinal image dataset for optic nerve head (ONH) segmentation. In: 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI), pp. 53–56. IEEE (2014)
Ketkar, N.: Deep Learning with Python. Apress, Berkeley (2017)
Chakravarty, A., Sivaswamy, J.: Joint optic disc and cup boundary extraction from monocular fundus images. Comput. Methods Programs Biomed. 147, 51–61 (2017)
Wang, L., Yang, S., Yang, S., et al.: Automatic thyroid nodule recognition and diagnosis in ultrasound imaging with the YOLOv2 neural network. World J. Surg. Oncol. 17(1), 1–9 (2019)
Abraham, N., Khan, N.M.: A novel focal tversky loss function with improved attention U-Net for lesion segmentation. In: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), pp. 683–687. IEEE (2019)
Kaul, C., Manandhar, S., Pears, N.: FocusNet: An Attention-Based Fully Convolutional Network for Medical Image Segmentation. arXiv preprint arXiv:1902.03091 (2019)
Zhang, Z., Yin, F.S., Liu, J., et al.: ORIGA(-light): an online retinal fundus image database for glaucoma analysis and research. In: Engineering in Medicine Biology Society. IEEE (2010)
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Jiang, Y., Gao, J., Wang, F. (2020). Joint Optic Disc and Optic Cup Segmentation Based on New Skip-Link Attention Guidance Network and Polar Transformation. In: Yang, H., Pasupa, K., Leung, A.CS., Kwok, J.T., Chan, J.H., King, I. (eds) Neural Information Processing. ICONIP 2020. Lecture Notes in Computer Science(), vol 12532. Springer, Cham. https://doi.org/10.1007/978-3-030-63830-6_34
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