Abstract
Deep learning-based methods have recently demonstrated remarkable results in deformable image registration for a wide range of medical image analysis tasks. However, most of the deep learning-based approaches are often limited to small deformation settings. In this paper, we describe a deformable image registration approach for the Learn2Reg 2020 challenge based on the Laplacian pyramid image registration networks. Our approach won 1st place in the Learn2Reg 2020 challenge.
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References
Learn2reg: 2020 miccai registration challenge. https://learn2reg.grand-challenge.org/. Accessed 10 Nov 2020
Balakrishnan, G., Zhao, A., Sabuncu, M.R., Guttag, J., Dalca, A.V.: An unsupervised learning model for deformable medical image registration. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 9252–9260 (2018)
Dalca, A.V., Balakrishnan, G., Guttag, J., Sabuncu, M.R.: Unsupervised learning for fast probabilistic diffeomorphic registration. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018, Part I. LNCS, vol. 11070, pp. 729–738. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00928-1_82
Ghiasi, G., Fowlkes, C.C.: Laplacian pyramid reconstruction and refinement for semantic segmentation. In: Leibe, B., Matas, J., Sebe, N., Welling, M. (eds.) ECCV 2016, Part III. LNCS, vol. 9907, pp. 519–534. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46487-9_32
Heinrich, M.P., Hansen, L.: Highly accurate and memory efficient unsupervised learning-based discrete CT registration using 2.5D displacement search. In: Martel, A.L., et al. (eds.) MICCAI 2020, Part III. LNCS, vol. 12263, pp. 190–200. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59716-0_19
Heinrich, M.P., et al.: Mind: modality independent neighbourhood descriptor for multi-modal deformable registration. Med. Image Anal. 16(7), 1423–1435 (2012)
Heinrich, M.P., Jenkinson, M., Brady, M., Schnabel, J.A.: MRF-based deformable registration and ventilation estimation of lung CT. IEEE Trans. Med. Imaging 32(7), 1239–1248 (2013)
Heinrich, M.P., Maier, O., Handels, H.: Multi-modal multi-atlas segmentation using discrete optimisation and self-similarities. VISCERAL Challenge@ ISBI 1390, 27 (2015)
Hering, A., Murphy, K., Ginneken, B.V.: Lean2Regchallenge: CT lung registration-training data [data set]. Zenodo (2020)
Lai, W.S., Huang, J.B., Ahuja, N., Yang, M.H.: Fast and accurate image super-resolution with deep Laplacian pyramid networks. IEEE Trans. Pattern Anal. Mach. Intell. 41(11), 2599–2613 (2018)
Mok, T.C., Chung, A.: Fast symmetric diffeomorphic image registration with convolutional neural networks. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 4644–4653 (2020)
Mok, T.C.W., Chung, A.C.S.: Large deformation diffeomorphic image registration with Laplacian pyramid networks. In: Martel, A.L., et al. (eds.) MICCAI 2020, Part III. LNCS, vol. 12263, pp. 211–221. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59716-0_21
Paszke, A., Gross, S., Chintala, S., et al.: Automatic differentiation in pytorch. In: NIPS-W (2017)
Rohé, M.-M., Datar, M., Heimann, T., Sermesant, M., Pennec, X.: SVF-Net: learning deformable image registration using shape matching. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10433, pp. 266–274. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-66182-7_31
Simpson, A.L., et al.: A large annotated medical image dataset for the development and evaluation of segmentation algorithms. arXiv preprint arXiv:1902.09063 (2019)
de Vos, B.D., Berendsen, F.F., Viergever, M.A., Staring, M., Išgum, I.: End-to-end unsupervised deformable image registration with a convolutional neural network. In: Cardoso, M., et al. (eds.) DLMIA/ML-CDS -2017. LNCS, vol. 10553, pp. 204–212. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-67558-9_24
Xiao, Y., Fortin, M., Unsgård, G., Rivaz, H., Reinertsen, I.: REtrospective evaluation of cerebral tumors (resect): a clinical database of pre-operative MRI and intra-operative ultrasound in low-grade glioma surgeries. Med. Phys. 44(7), 3875–3882 (2017)
Xu, Z., et al.: Evaluation of six registration methods for the human abdomen on clinically acquired CT. IEEE Trans. Biomed. Eng. 63(8), 1563–1572 (2016)
Zhao, S., Dong, Y., Chang, E.I., Xu, Y., et al.: Recursive cascaded networks for unsupervised medical image registration. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 10600–10610 (2019)
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Mok, T.C.W., Chung, A.C.S. (2021). Large Deformation Image Registration with Anatomy-Aware Laplacian Pyramid Networks. In: Shusharina, N., Heinrich, M.P., Huang, R. (eds) Segmentation, Classification, and Registration of Multi-modality Medical Imaging Data. MICCAI 2020. Lecture Notes in Computer Science(), vol 12587. Springer, Cham. https://doi.org/10.1007/978-3-030-71827-5_7
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