Abstract
In this paper, a model of nonlinear dynamic system with Lévy jumps based on cargo sorting DNA robot is studied. Firstly, nonlinear biochemical reaction system based on cargo sorting DNA robot model is established. Considering the influence of external disturbances on the system, nonlinear biochemical reaction system with Lévy jump is built and its dimensionality is reduced. Secondly, in order to prove that the built system conforms to the actual meaning, the existence and uniqueness of the system solution is verified. Next, the sufficient conditions for the completion of cargo pick-up of cargo sorting DNA robot and the continued sufficiency are introduced, and the progress of cargo sorting DNA robot under different noise intensities is analyzed. Then, it is proved that the positive recursion of the reaction can better describe and show the persistence of the system. Finally, numerical simulations verify the correctness of the theoretical results. The results show that the end of cargo pick-up with DNA robots for cargo sorting is closely related to the intensity of noise.
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References
Nummelin, S., Shen, B., Piskunen, P., Liu, Q., Kostiainen, M.A., Linko, V.: Robotic DNA nanostructures. ACS Synth. Biol. 9(8), 1923–1940 (2020)
Kawano, R.: Synthetic ion channels and DNA logic gates as components of molecular robots. ChemPhysChem 19(4), 359–366 (2018)
Muscat, R.A., Bath, J., Turberfield, A.J.: A programmable molecular robot. Nano Lett. 11(3), 982–987 (2011)
Kabir, A.M.R., Inoue, D., Kakugo, A.: Molecular swarm robots: recent progress and future challenges. Sci. Technol. Adv. Mater. 21(1), 323–332 (2020)
Shoji, K., Kawano, R.: Recent advances in liposome-based molecular robots. Micromachines (Basel). 11(9), 788 (2020)
Chang, Y., Wu, Z., Sun, Q., Zhuo, Y., Chai, Y., Yuan, R.: Simply Constructed and Highly Efficient Classified Cargo-Discharge DNA Robot: A DNA Walking Nanomachine Platform for Ultrasensitive Multiplexed Sensing. Anal. Chem. 91(13), 8123–8128 (2019)
Thubagere, A.J., Li, W., Johnson, R.F., Chen, Z., Doroudi, S., Lee, Y.L., et al.: A cargo-sorting DNA robot. Science. 357(6356) (2017)
Taylor, S., Stojanovic, M.N.: Is there a future for DNA-based molecular devices in diabetes management? J. Diabetes Sci. Technol. 1(3), 440–444 (2007)
Qian, H., Bishop, L.M.: The chemical master equation approach to nonequilibrium steady-state of open biochemical systems: linear single-molecule enzyme kinetics and nonlinear biochemical reaction networks. Int. J. Mol. Sci. 11(9), 3472–3500 (2010)
Shindo, Y., Kondo, Y., Sako, Y.: Inferring a nonlinear biochemical network model from a heterogeneous single-cell time course data. Sci Rep. 8(1), 6790 (2018)
Bashkirtseva, I., Ryashko, L., Zaitseva, S.: Stochastic sensitivity analysis of noise-induced transitions in a biochemical model with birhythmicity. J. Phys. A: Math. Theor. 53(26), 265601 (2020)
Getz, M.C., Nirody, J.A., Rangamani, P.: Stability analysis in spatial modeling of cell signaling. Wiley Interdiscip Rev Syst Biol Med. 10(1) (2018)
Cuba Samaniego, C., Giordano, G., Blanchini, F., Franco, E.: Stability analysis of an artificial biomolecular oscillator with non-cooperative regulatory interactions. J. Biol. Dyn. 11(1), 102–120 (2017)
Sun, X., Medvedovic, M.: Model reduction and parameter estimation of non-linear dynamical biochemical reaction networks. IET Syst Biol. 10(1), 10–16 (2016)
Liu, Y., Zhang, Y., Wang, Q.: A stochastic SIR epidemic model with Lévy jump and media coverage. Adv. Differ. Equ. 2020(1), 1–15 (2020). https://doi.org/10.1186/s13662-020-2521-6
Caraballo, T., Settati, A., Fatini, M.E., Lahrouz, A., Imlahi, A.: Global stability and positive recurrence of a stochastic SIS model with Lévy noise perturbation. Phys. A 523, 677–690 (2019)
Deng, M.: Stability of a stochastic delay commensalism model with Lévy jumps. Phys. A: Stat. Mech. Appl. 527, 121061 (2019)
Liu, C., Liu, M.: Stochastic dynamics in a nonautonomous prey-predator system with impulsive perturbations and Lévy jumps. Commun. Nonlinear Sci. Numer. Simul. 78, 104851 (2019)
Gao, M., Jiang, D.: Analysis of stochastic multimolecular biochemical reaction model with lévy jumps. Phys. A 524, 601–613 (2019)
Acknowledgements
This work is supported by the National Key R&D Program of China (No. 2018YFC0910500), National Natural Science Foundation of China (Nos. 61425002, 61751203, 61772100, 61972266, 61802040, 61672121, 61572093), Program for Changjiang Scholars and Innovative Research Team in University (No. IRT_15R07), Program for Liaoning Innovative Research Team in University (No. LT2017012), Natural Science Foundation of Liaoning Province (Nos. 2020-KF-14–05, 2019-ZD-0567), High-level Talent Innovation Support Program of Dalian City (Nos. 2017RQ060, 2018RQ75), Dalian Outstanding Young Science and Technology Talent Support Program (No. 2017RJ08), State Key Laboratory of Light Alloy Casting Technology for High-end Equipment (No.LACT-006) and Scientific Research Fund of Liaoning Provincial Education Department (No. JYT19051).
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Fu, H., Lv, H., Zhang, Q. (2021). Modeling and Analysis of Nonlinear Dynamic System with Lévy Jump Based on Cargo Sorting DNA Robot. In: Tan, Y., Shi, Y. (eds) Advances in Swarm Intelligence. ICSI 2021. Lecture Notes in Computer Science(), vol 12689. Springer, Cham. https://doi.org/10.1007/978-3-030-78743-1_50
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DOI: https://doi.org/10.1007/978-3-030-78743-1_50
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