Skip to main content

Comprehensive Importance-Based Selective Regularization for Continual Segmentation Across Multiple Sites

  • Conference paper
  • First Online:
Medical Image Computing and Computer Assisted Intervention – MICCAI 2021 (MICCAI 2021)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 12901))

Abstract

In clinical practice, a desirable medical image segmentation model should be able to learn from sequential training data from multiple sites, as collecting these data together could be difficult due to the storage cost and privacy restriction. However, existing methods often suffer from catastrophic forgetting problem for previous sites when learning from images from a new site. In this paper, we propose a novel comprehensive importance-based selective regularization method for continual segmentation, aiming to mitigate model forgetting by maintaining both shape and reliable semantic knowledge for previous sites. Specifically, we define a comprehensive importance weight for each model parameter, which consists of shape-aware importance and uncertainty-guided semantics-aware importance, by measuring how a segmentation’s shape and reliable semantic information is sensitive to the parameter. When training model on a new site, we adopt a selective regularization scheme that penalizes changes of parameters with high comprehensive importance, avoiding the shape knowledge and reliable semantics related to previous sites being forgotten. We evaluate our method on prostate MRI data sequentially acquired from six institutes. Results show that our method outperforms many continual learning methods for relieving model forgetting issue. Code is available at https://github.com/jingyzhang/CISR.

J. Zhang and R. Gu—The authors contributed equally to this work.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    Before each round of continual learning, the encoder component is pretrained and consecutively fine-tuned with the coupled decoder component, by minimizing a reconstruction loss with ground truth mask inputs. It should be frozen [24] in the later to avoid being corrupted by incomplete shape predictions due to model forgetting.

References

  1. Aljundi, R., Babiloni, F., Elhoseiny, M., Rohrbach, M., Tuytelaars, T.: Memory aware synapses: learning what (not) to forget. In: Proceedings of the European Conference on Computer Vision, pp. 139–154 (2018)

    Google Scholar 

  2. Aljundi, R., Chakravarty, P., Tuytelaars, T.: Expert gate: lifelong learning with a network of experts. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 3366–3375 (2017)

    Google Scholar 

  3. Bloch, N., et al.: NCI-ISBI 2013 challenge: automated segmentation of prostate structures. Cancer Imaging Arch. (2015)

    Google Scholar 

  4. Douillard, A., Chen, Y., Dapogny, A., Cord, M.: PLOP: learning without forgetting for continual semantic segmentation. arXiv preprint arXiv:2011.11390 (2020)

  5. Karani, N., Chaitanya, K., Baumgartner, C., Konukoglu, E.: A lifelong learning approach to brain MR segmentation across scanners and protocols. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11070, pp. 476–484. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00928-1_54

    Chapter  Google Scholar 

  6. Kendall, A., Gal, Y.: What uncertainties do we need in bayesian deep learning for computer vision? In: Advances in Neural Information Processing Systems, pp. 5574–5584 (2017)

    Google Scholar 

  7. Kirkpatrick, J., et al.: Overcoming catastrophic forgetting in neural networks. Proc. Natl. Acad. Sci. 114(13), 3521–3526 (2017)

    Article  MathSciNet  Google Scholar 

  8. Lemaître, G., Martí, R., Freixenet, J., Vilanova, J.C., Walker, P.M., Meriaudeau, F.: Computer-aided detection and diagnosis for prostate cancer based on mono and multi-parametric MRI: A review. Comput. Biol. Med. 60, 8–31 (2015)

    Article  Google Scholar 

  9. Litjens, G., Litjens, G., et al.: A survey on deep learning in medical image analysis. Med. Image Anal. 42, 60–88 (2017)

    Article  Google Scholar 

  10. Litjens, G., et al.: Evaluation of prostate segmentation algorithms for MRI: the PROMISE12 challenge. Med. Image Anal. 18(2), 359–373 (2014)

    Article  Google Scholar 

  11. Liu, Q., Dou, Q., Yu, L., Heng, P.A.: MS-Net: multi-site network for improving prostate segmentation with heterogeneous MRI data. IEEE Trans. Med. Imaging 39(9), 2713–2724 (2020)

    Article  Google Scholar 

  12. Liu, Q., Dou, Q., Heng, P.-A.: Shape-aware meta-learning for generalizing prostate MRI segmentation to unseen domains. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12262, pp. 475–485. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59713-9_46

    Chapter  Google Scholar 

  13. Lopez-Paz, D., Ranzato, M.: Gradient episodic memory for continual learning. In: Advances in Neural Information Processing Systems, pp. 6467–6476 (2017)

    Google Scholar 

  14. Ma, J., He, J., Yang, X.: Learning geodesic active contours for embedding object global information in segmentation CNNs. IEEE Trans. Med. Imaging 40(1), 93–104 (2021)

    Article  Google Scholar 

  15. McCloskey, M., Cohen, N.J.: Catastrophic interference in connectionist networks: the sequential learning problem. In: Psychology of Learning and Motivation, vol. 24, pp. 109–165. Elsevier (1989)

    Google Scholar 

  16. Navarro, F., et al.: Shape-aware complementary-task learning for multi-organ segmentation. In: Suk, H.-I., Liu, M., Yan, P., Lian, C. (eds.) MLMI 2019. LNCS, vol. 11861, pp. 620–627. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32692-0_71

    Chapter  Google Scholar 

  17. Oktay, O., et al.: Anatomically constrained neural networks (ACNNs): application to cardiac image enhancement and segmentation. IEEE Trans. Med. Imaging 37(2), 384–395 (2017)

    Article  Google Scholar 

  18. Parisi, G.I., Kemker, R., Part, J.L., Kanan, C., Wermter, S.: Continual lifelong learning with neural networks: a review. Neural Netw. 113, 54–71 (2019)

    Article  Google Scholar 

  19. Rebuffi, S.A., Kolesnikov, A., Sperl, G., Lampert, C.H.: ICARL: incremental classifier and representation learning. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 2001–2010 (2017)

    Google Scholar 

  20. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

    Chapter  Google Scholar 

  21. Shin, H., Lee, J.K., Kim, J., Kim, J.: Continual learning with deep generative replay. In: Advances in Neural Information Processing Systems, pp. 2990–2999 (2017)

    Google Scholar 

  22. Wang, G., et al.: Interactive medical image segmentation using deep learning with image-specific fine tuning. IEEE Trans. Med. Imaging 37(7), 1562–1573 (2018)

    Article  Google Scholar 

  23. Yoon, J., Yang, E., Lee, J., Hwang, S.J.: Lifelong learning with dynamically expandable networks. arXiv preprint arXiv:1708.01547 (2017)

  24. Yue, Q., Luo, X., Ye, Q., Xu, L., Zhuang, X.: Cardiac segmentation from LGE MRI using deep neural network incorporating shape and spatial priors. In: Medical Image Computing and Computer-Assisted Intervention, pp. 559–567 (2019)

    Google Scholar 

  25. Zenke, F., Poole, B., Ganguli, S.: Continual learning through synaptic intelligence. Proc. Mach. Learn. Res. 70, 3987 (2017)

    Google Scholar 

Download references

Acknowledgments

This research is partially supported by the National Key research and development program (No. 2016YFC0106200), Beijing Natural Science Foundation-Haidian Original Innovation Collaborative Fund (No. L192006), and the funding from Institute of Medical Robotics of Shanghai Jiao Tong University as well as the 863 national research fund (No. 2015AA043203).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Lixu Gu .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Zhang, J., Gu, R., Wang, G., Gu, L. (2021). Comprehensive Importance-Based Selective Regularization for Continual Segmentation Across Multiple Sites. In: de Bruijne, M., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2021. MICCAI 2021. Lecture Notes in Computer Science(), vol 12901. Springer, Cham. https://doi.org/10.1007/978-3-030-87193-2_37

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-87193-2_37

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-87192-5

  • Online ISBN: 978-3-030-87193-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics