Skip to main content

3D Transformer-GAN for High-Quality PET Reconstruction

  • Conference paper
  • First Online:
Medical Image Computing and Computer Assisted Intervention – MICCAI 2021 (MICCAI 2021)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 12906))

Abstract

To obtain high-quality positron emission tomography (PET) image at low dose, this study proposes an end-to-end 3D generative adversarial network embedded with transformer, namely Transformer-GAN, to reconstruct the standard-dose PET (SPET) image from the corresponding low-dose PET (LPET) image. Specifically, considering the convolutional neural network (CNN) can well describe the local spatial features, while the transformer is good at capturing the long-range semantic information due to its global information extraction ability, our generator network takes advantages of both CNN and transformer, and is designed as an architecture of EncoderCNN-Transformer-DecoderCNN. Particularly, the EncoderCNN aims to extract compact feature representations with rich spatial information by using CNN, while the Transformer targets at capturing the long-range dependencies between the features learned by the EncoderCNN. Finally, the DecoderCNN is responsible for restoring the reconstructed PET image. Moreover, to ensure the similarity of voxel-level intensities as well as the data distributions between the reconstructed image and the real image, we harness both the voxel-wise estimation error and the adversarial loss to train the generator network. Validations on the clinical PET data show that our proposed method outperforms the state-of-the-art methods in both qualitative and quantitative measures.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Chen, W.: Clinical applications of PET in brain tumors. J. Nucl. Med. 48(9), 1468–1481 (2007)

    Article  Google Scholar 

  2. Xiang, L., Qiao, Y., Nie, D., et al.: Deep auto-context convolutional neural networks for standard-dose PET image estimation from low-dose PET/MRI. Neurocomputing 267, 406–416 (2017)

    Article  Google Scholar 

  3. Kim, K., Wu, D., Gong, K., et al.: Penalized PET reconstruction using deep learning prior and local linear fitting. IEEE Trans. Med. Imaging 37(6), 1478–1487 (2018)

    Article  Google Scholar 

  4. Wang, Y., Yu, B., Wang, L., et al.: 3D conditional generative adversarial networks for high-quality PET image estimation at low dose. Neuroimage 174, 550–562 (2018)

    Article  Google Scholar 

  5. Wang, Y., Zhou, L., Yu, B., et al.: 3D auto-context-based locality adaptive multi-modality GANs for PET synthesis. IEEE Trans. Med. Imaging 38(6), 1328–1339 (2019)

    Article  Google Scholar 

  6. Feng, Q., Liu, H.: Rethinking PET image reconstruction: ultra-low-dose, sinogram and deep learning. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12267, pp. 783–792. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59728-3_76

    Chapter  Google Scholar 

  7. Gong, K., Guan, J., Liu, C.C., et al.: PET image denoising using a deep neural network through fine tuning. IEEE Trans. Radiat. Plasma Med. Sci. 3(2), 153–161 (2018)

    Article  Google Scholar 

  8. Spuhler, K., Serrano-Sosa, M., Cattell, R., et al.: Full-count PET recovery from low-count image using a dilated convolutional neural network. Med. Phys. 47(10), 4928–4938 (2020)

    Article  Google Scholar 

  9. Xu, J., Gong, E., Pauly, J., et al.: 200x low-dose PET reconstruction using deep learning. arXiv preprint arXiv:1712.04119 (2017)

  10. Xiang, L., Wang, L., Gong, E., Zaharchuk, G., Zhang, T.: Noise-aware standard-dose PET reconstruction using general and adaptive robust loss. In: Liu, M., Yan, P., Lian, C., Cao, X. (eds.) MLMI 2020. LNCS, vol. 12436, pp. 654–662. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59861-7_66

    Chapter  Google Scholar 

  11. Khan, S., Naseer, M., Hayat, M., et al.: Transformers in vision: a Survey. arXiv preprint arXiv:2101.01169 (2021)

  12. Vaswani, A., Shazeer, N., Parmar, N., et al.: Attention is all you need. arXiv preprint arXiv:1706.03762 (2017)

  13. Carion, N., Massa, F., Synnaeve, G., et al.: End-to-end object detection with transformers. In: European Conference on Computer Vision, pp. 213–229. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-58452-8_13

  14. Wang, H., Zhu, Y., Adam, H., et al.: MaX-DeepLab: end-to-end panoptic segmentation with mask transformers. arXiv preprint arXiv:2012.00759 (2020)

  15. Parmar, N., Vaswani, A., Uszkoreit, J., et al.: Image transformer. In: International Conference on Machine Learning. PMLR, pp. 4055–4064 (2018)

    Google Scholar 

  16. Ronneberger, O., Fischer, P., Brox, T.: U-net: convolutional networks for biomedical image segmentation. International Conference on Medical image Computing and Computer-Assisted Intervention, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

  17. Goodfellow, I., Pouget-Abadie, J., Mirza, M.: Generative adversarial nets. In: Advances in Neural Information Processing Systems, pp. 2672–2680 (2014)

    Google Scholar 

Download references

Acknowledgement

This work is supported by National Natural Science Foundation of China (NFSC 62071314) and Sichuan Science and Technology Program (2021YFG0326, 2020YFG0079).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Luping Zhou .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Luo, Y. et al. (2021). 3D Transformer-GAN for High-Quality PET Reconstruction. In: de Bruijne, M., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2021. MICCAI 2021. Lecture Notes in Computer Science(), vol 12906. Springer, Cham. https://doi.org/10.1007/978-3-030-87231-1_27

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-87231-1_27

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-87230-4

  • Online ISBN: 978-3-030-87231-1

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics