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Window-Level Is a Strong Denoising Surrogate

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Machine Learning in Medical Imaging (MLMI 2021)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 12966))

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Abstract

CT image quality is heavily reliant on radiation dose, which causes a trade-off between radiation dose and image quality that affects the subsequent image-based diagnostic performance. However, high radiation can be harmful to both patients and operators. Several (deep learning-based) approaches have been attempted to denoise low dose images. However, those approaches require access to large training sets, specifically the full dose CT images for reference, which can often be difficult to obtain. Self-supervised learning is an emerging alternative for lowering the reference data requirement facilitating unsupervised learning. Currently available self-supervised CT denoising works are either dependent on foreign domains or pretexts that are not very task-relevant. To tackle the aforementioned challenges, we propose a novel self-supervised learning approach, namely Self-Supervised Window-Leveling for Image DeNoising (SSWL-IDN), leveraging an innovative, task-relevant, simple, yet effective surrogate—prediction of the window-leveled equivalent. SSWL-IDN leverages residual learning and a hybrid loss combining perceptual loss and MSE, all incorporated in a VAE framework. Our extensive (in- and cross-domain) experimentation demonstrates the effectiveness of SSWL-IDN in aggressive denoising of CT (abdomen and chest) images acquired at 5% dose level only (Code available at https://github.com/ayaanzhaque/SSWL-IDN).

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Notes

  1. 1.

    For chest scans, the 5% dose level is simulated from routine and 10% dose level scans available in the Mayo data library.

References

  1. Ataei, S., Alirezaie, J., Babyn, P.: Cascaded convolutional neural networks with perceptual loss for low dose CT denoising. In: 2020 International Joint Conference on Neural Networks (IJCNN), pp. 1–5. IEEE (2020)

    Google Scholar 

  2. Biswas, B., Ghosh, S.K., Ghosh, A.: DVAE: deep variational auto-encoders for denoising retinal fundus image. In: Bhattacharyya, S., Konar, D., Platos, J., Kar, C., Sharma, K. (eds.) Hybrid Machine Intelligence for Medical Image Analysis. SCI, vol. 841, pp. 257–273. Springer, Singapore (2020). https://doi.org/10.1007/978-981-13-8930-6_10

    Chapter  Google Scholar 

  3. Brenner, D.J., Hall, E.J.: Computed tomography - an increasing source of radiation exposure. N. Engl. J. Med. 357(22), 2277–2284 (2007). https://doi.org/10.1056/NEJMra072149. pMID: 18046031

  4. Chen, B., Duan, X., Yu, Z., Leng, S., Yu, L., McCollough, C.: Development and validation of an open data format for CT projection data. Med. Phys. 42(12), 6964–6972 (2015)

    Article  Google Scholar 

  5. Chen, H., et al.: Low-dose CT with a residual encoder-decoder convolutional neural network. IEEE Trans. Med. Imaging 36(12), 2524–2535 (2017). https://doi.org/10.1109/TMI.2017.2715284

  6. Chen, H., Zhang, Y., Zhang, W., Liao, P., Li, K., Zhou, J., Wang, G.: Low-dose CT denoising with convolutional neural network. In: 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), pp. 143–146. IEEE (2017b)

    Google Scholar 

  7. Diwakar, M., Kumar, M.: A review on CT image noise and its denoising. Biomed. Signal Process. Control 42, 73–88 (2018)

    Article  Google Scholar 

  8. Gholizadeh-Ansari, M., Alirezaie, J., Babyn, P.: Deep learning for low-dose CT denoising using perceptual loss and edge detection layer. J. Digit. Imaging, 1–12 (2019)

    Google Scholar 

  9. He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)

    Google Scholar 

  10. Im Im, D., Ahn, S., Memisevic, R., Bengio, Y.: Denoising criterion for variational auto-encoding framework. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 31 (2017)

    Google Scholar 

  11. Kingma, D.P., Salimans, T., Jozefowicz, R., Chen, X., Sutskever, I., Welling, M.: Improving variational inference with inverse autoregressive flow. arXiv preprint arXiv:1606.04934 (2016)

  12. Kingma, D.P., Welling, M.: Auto-encoding variational bayes. arXiv preprint arXiv:1312.6114 (2013)

  13. Krull, A., Buchholz, T.O., Jug, F.: Noise2Void-learning denoising from single noisy images. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 2129–2137 (2019)

    Google Scholar 

  14. Laine, S., Karras, T., Lehtinen, J., Aila, T.: High-quality self-supervised deep image denoising. In: Advances in Neural Information Processing Systems, vol. 32, pp. 6970–6980 (2019)

    Google Scholar 

  15. Ma, Y., Wei, B., Feng, P., He, P., Guo, X., Wang, G.: Low-dose CT image denoising using a generative adversarial network with a hybrid loss function for noise learning. IEEE Access 8, 67519–67529 (2020)

    Article  Google Scholar 

  16. Quan, Y., Chen, M., Pang, T., Ji, H.: Self2Self with dropout: learning self-supervised denoising from single image. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), June 2020

    Google Scholar 

  17. de Sa, V.R.: Learning classification with unlabeled data. In: Advances in Neural Information Processing Systems, pp. 112–119. Citeseer (1994)

    Google Scholar 

  18. Wu, D., Ren, H., Li, Q.: Self-supervised dynamic CT perfusion image denoising with deep neural networks. IEEE Trans. Radiat. Plasma Med. Sci. (2020)

    Google Scholar 

  19. Xie, Y., Wang, Z., Ji, S.: Noise2Same: optimizing a self-supervised bound for image denoising. In: Advances in Neural Information Processing Systems, vol. 33 (2020)

    Google Scholar 

  20. Xu, J., et al.: Noisy-As-Clean: learning self-supervised denoising from corrupted image. IEEE Trans. Image Process. 29, 9316–9329 (2020)

    Article  Google Scholar 

  21. Yang, Q., et al.: Low-dose CT image denoising using a generative adversarial network with wasserstein distance and perceptual loss. IEEE Trans. Med. Imaging 37(6), 1348–1357 (2018). http://dx.doi.org/10.1109/TMI.2018.2827462

  22. Yi, X., Babyn, P.: Sharpness-aware low-dose CT denoising using conditional generative adversarial network. J. Digital Imaging 31(5), 655–669 (2018)

    Article  Google Scholar 

  23. Yu, L., Shiung, M., Jondal, D., McCollough, C.H.: Development and validation of a practical lower-dose-simulation tool for optimizing computed tomography scan protocols. J. Comput. Assist. Tomogr. 36(4), 477–487 (2012)

    Article  Google Scholar 

  24. Yuan, N., Zhou, J., Qi, J.: Half2Half: deep neural network based CT image denoising without independent reference data. Phys. Med. Biol. 65(21), 215020 (2020)

    Google Scholar 

  25. Yue, Z., Yong, H., Zhao, Q., Zhang, L., Meng, D.: Variational denoising network: Toward blind noise modeling and removal. In: The Thirty-third Annual Conference on Neural Information Processing Systems (2019)

    Google Scholar 

  26. Zhang, K., Zuo, W., Chen, Y., Meng, D., Zhang, L.: Beyond a gaussian denoiser: residual learning of deep CNN for image denoising. IEEE Trans. Image Process. 26(7), 3142–3155 (2017)

    Article  MathSciNet  Google Scholar 

  27. Zhang, R., Isola, P., Efros, A.A., Shechtman, E., Wang, O.: The unreasonable effectiveness of deep features as a perceptual metric. In: CVPR (2018)

    Google Scholar 

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Haque, A., Wang, A., Imran, AAZ. (2021). Window-Level Is a Strong Denoising Surrogate. In: Lian, C., Cao, X., Rekik, I., Xu, X., Yan, P. (eds) Machine Learning in Medical Imaging. MLMI 2021. Lecture Notes in Computer Science(), vol 12966. Springer, Cham. https://doi.org/10.1007/978-3-030-87589-3_47

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  • DOI: https://doi.org/10.1007/978-3-030-87589-3_47

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-87588-6

  • Online ISBN: 978-3-030-87589-3

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