Abstract
Using radiological scans to identify liver tumors is crucial for proper patient treatment. This is highly challenging, as top radiologists only achieve F1 scores of roughly \(80\%\) (hepatocellular carcinoma (HCC) vs. others) with only moderate inter-rater agreement, even when using multi-phase magnetic resonance (MR) imagery. Thus, there is great impetus for computer-aided diagnosis (CAD) solutions. A critical challenge is to robustly parse a 3D MR volume to localize diagnosable regions of interest (ROI), especially for edge cases. In this paper, we break down this problem using key-slice prediction (KSP), which emulates physician workflows by predicting the slice a physician would choose as “key” and then localizing the corresponding key ROIs. To achieve robustness, the KSP also uses curve-parsing and detection confidence re-weighting. We evaluate our approach on the largest multi-phase MR liver lesion test dataset to date (430 biopsy-confirmed patients). Experiments demonstrate that our KSP can localize diagnosable ROIs with high reliability: \(87\%\) patients have an average 3D overlap of \({\ge }40\%\) with the ground truth compared to only \(79\%\) using the best tested detector. When coupled with a classifier, we achieve an HCC vs. others F1 score of 0.801, providing a fully-automated CAD performance comparable to top human physicians.
B. Lai, Y. Wu and X. Bai—Equal contribution.
This work was done when X. Bai was an intern at Ping An Technology.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Adcock, A., Rubin, D., Carlsson, G.: Classification of hepatic lesions using the matching metric. Comput. Vis. Image Underst. 121, 36–42 (2014)
Aubé, C., et al.: EASL and AASLD recommendations for the diagnosis of HCC to the test of daily practice. Liver Int. 37(10), 1515–1525 (2017)
Bilic, P., et al.: The liver tumor segmentation benchmark (LiTS) (2019)
Bosch, F.X., Ribes, J., Díaz, M., Cléries, R.: Primary liver cancer: worldwide incidence and trends. Gastroenterology 127(5), S5–S16 (2004)
Cai, J., et al.: Lesion harvester: iteratively mining unlabeled lesions and hard-negative examples at scale. TMI (2020, accepted)
Chen, X., et al.: A cascade attention network for liver lesion classification in weakly-labeled multi-phase CT images. In: Wang, Q., et al. (eds.) DART/MIL3ID -2019. LNCS, vol. 11795, pp. 129–138. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-33391-1_15
Diamant, I., et al.: Improved patch-based automated liver lesion classification by separate analysis of the interior and boundary regions. JBHI 20(6), 1585–1594 (2015)
Eisenhauer, E., Therasse, P., Bogaerts, J., et al.: New response evaluation criteria in solid tumours: revised RECIST guideline (v1.1). EJC 45(2), 228–247 (2009)
Fowler, K.J., et al.: Interreader reliability of LI-RADS version 2014 algorithm and imaging features for diagnosis of hepatocellular carcinoma: a large international multireader study. Radiology 286(1), 173–185 (2018)
Freeman, R.B., et al.: Optimizing staging for hepatocellular carcinoma before liver transplantation: a retrospective analysis of the UNOS/OPTN database. Liver Transpl. 12(10), 1504–1511 (2006)
Galloway, M.M.: Texture analysis using gray level run lengths. Comput. Graph. Image Process. 4(2), 172–179 (1975)
Goyal, P., et al.: Accurate, large minibatch SGD: training ImageNet in 1 hour. arXiv abs/1706.02677 (2017)
Grant, A., Neuberger, J.: Guidelines on the use of liver biopsy in clinical practice. Gut 45(Suppl. 4), IV1–IV11 (1999)
Haralick, R.M., Shanmugam, K., Dinstein, I.H.: Textural features for image classification. IEEE Trans. Syst. Man Cybern. 610–621 (1973)
He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: CVPR, pp. 770–778 (2016)
Heinrich, M.P., Jenkinson, M., Brady, M., Schnabel, J.A.: MRF-based deformable registration and ventilation estimation of lung CT. TMI 32(7), 1239–1248 (2013)
Huang, G., Liu, Z., Van Der Maaten, L., Weinberger, K.Q.: Densely connected convolutional networks. In: CVPR, pp. 4700–4708 (2017)
Huo, Y., et al.: Harvesting, detecting, and characterizing liver lesions from large-scale multi-phase CT data via deep dynamic texture learning. arXiv:2006.15691 (2020)
Kingma, D.P., Ba, J.: Adam: a method for stochastic optimization. arXiv preprint arXiv:1412.6980 (2014)
Oliva, M.R., Saini, S.: Liver cancer imaging: role of CT, MRI, US and PET. Cancer Imaging 4(Spec No A), S42 (2004)
Sun, C., Wee, W.G.: Neighboring gray level dependence matrix for texture classification. Comput. Vis. Graph. Image Process. 23(3), 341–352 (1983)
Thibault, G., et al.: Shape and texture indexes application to cell nuclei classification. Int. J. Pattern Recognit Artif Intell. 27(01), 1357002 (2013)
Van Griethuysen, J.J., et al.: Computational radiomics system to decode the radiographic phenotype. Can. Res. 77(21), e104–e107 (2017)
Wang, X., Peng, Y., Lu, L., Lu, Z., Bagheri, M., Summers, R.M.: ChestX-ray8: hospital-scale chest X-ray database and benchmarks on weakly-supervised classification and localization of common thorax diseases. In: CVPR, pp. 2097–2106 (2017)
Wu, J., Liu, A., Cui, J., Chen, A., Song, Q., Xie, L.: Radiomics-based classification of hepatocellular carcinoma and hepatic haemangioma on precontrast magnetic resonance images. BMC Med. Imaging 19(1), 23 (2019)
Xie, S., Girshick, R., Dollár, P., Tu, Z., He, K.: Aggregated residual transformations for deep neural networks. In: CVPR, pp. 1492–1500 (2017)
Yan, K., Bagheri, M., Summers, R.M.: 3D context enhanced region-based convolutional neural network for end-to-end lesion detection. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11070, pp. 511–519. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00928-1_58
Yan, K., Lu, L., Summers, R.M.: Unsupervised body part regression via spatially self-ordering convolutional neural networks. In: ISBI, pp. 1022–1025. IEEE (2018)
Yang, W., Lu, Z., Yu, M., Huang, M., Feng, Q., Chen, W.: Content-based retrieval of focal liver lesions using bag-of-visual-words representations of single-and multiphase contrast-enhanced ct images. JDI 25(6), 708–719 (2012)
Zhang, H., Xue, J., Dana, K.: Deep ten: texture encoding network. In: CVPR, pp. 708–717 (2017)
Zhang, S., Chi, C., Yao, Y., Lei, Z., Li, S.Z.: Bridging the gap between anchor-based and anchor-free detection via adaptive training sample selection. In: CVPR, pp. 9759–9768 (2020)
Zhen, S., et al.: Deep learning for accurate diagnosis of liver tumor based on magnetic resonance imaging and clinical data. Front. Oncol. 10, 680 (2020)
Zhou, X., Wang, D., Krähenbühl, P.: Objects as points. arXiv:1904.07850 (2019)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2021 Springer Nature Switzerland AG
About this paper
Cite this paper
Lai, B. et al. (2021). Liver Tumor Localization and Characterization from Multi-phase MR Volumes Using Key-Slice Prediction: A Physician-Inspired Approach. In: Rekik, I., Adeli, E., Park, S.H., Schnabel, J. (eds) Predictive Intelligence in Medicine. PRIME 2021. Lecture Notes in Computer Science(), vol 12928. Springer, Cham. https://doi.org/10.1007/978-3-030-87602-9_5
Download citation
DOI: https://doi.org/10.1007/978-3-030-87602-9_5
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-87601-2
Online ISBN: 978-3-030-87602-9
eBook Packages: Computer ScienceComputer Science (R0)