Abstract
The understanding of life has always been is a challenge of Life Science. Modeling life implies the need to describe the required details of the systemic structure associated with the working mechanisms of life. In this research, we propose that conceptual modeling can play a crucial role in the modeling of life. Specifically, we introduce the notion of “system” as a separate, and core, conceptual modeling construct and demonstrates how to incorporate it into existing, traditional approaches to conceptual modeling. The work is based on the systemism concept as defined by prior work on ontology. The modeling foundations for systemism are provided and applied to case studies to demonstrate the contributions of the systemic approach over traditional conceptual modeling constructs. In doing so, we provide a high-level approach to modeling systems, which should contribute to dealing with complex systems and structures, such as those generally found in the life sciences.
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References
Recker, J., Lukyanenko, R., Sabegh, M.A., Samuel, B.M., Castellanos, A.: From representation to mediation: a new agenda for conceptual modeling research in a digital world. MIS Q. 45, 269–300 (2021)
Bunge, M.A.: Finding Philosophy in Social Science. Yale University Press, New Haven, CT (1996)
Checkland, P., Holwell, S.: Information, Systems, and Information Systems: Making Sense of the Field. John Wiley & Sons Inc., Hoboken, NJ (1998)
Lukyanenko, R.: A journey to BSO: evaluating earlier and more recent ideas of Mario Bunge as a foundation for information and software development. In: Exploring Modeling Methods for Systems Analysis and Development (EMMSAD 2020), pp. 1–15. Grenoble, France (2020)
Guarino, N., Guizzardi, G., Mylopoulos, J.: On the philosophical foundations of conceptual models. Inf. Model. Knowl. Bases 31, 1 (2020)
Guizzardi, G.: Ontological foundations for structural conceptual models. Telematics Instituut Fundamental Research Series, Enschede, The Netherlands (2005)
Wand, Y., Weber, R.: Thirty years later: some reflections on ontological analysis in conceptual modeling. J. Database Manag. (JDM). 28, 1–17 (2017)
Wand, Y., Weber, R.: On the ontological expressiveness of information systems analysis and design grammars. Inf. Syst. J. 3, 217–237 (1993)
Wand, Y., Storey, V.C., Weber, R.: An ontological analysis of the relationship construct in conceptual modeling. ACM Trans. Database Syst. 24, 494–528 (1999)
Burton-Jones, A., Green, P., Parsons, J., Siau, K.: Special issue on ontological analysis in conceptual modeling, Part 2. J. Database Manag. 28, i–x (2017)
Lukyanenko, R., Storey, V.C., Pastor, O.: Foundations of information technology based on Bunge’s systemist philosophy of reality. Softw. Syst. Model. 20(4), 921–938 (2021)
Castellanos, A., Lukyanenko, R., Storey, V.C.: Modeling observational crowdsourcing. In: ER Forum 2020, pp. 1–8. Vienna, Austria (2020)
Bunge, M.A.: Philosophy of Science: Volume 2, From Explanation to Justification. Routledge, New York NY (2017)
Bunge, M.A.: Chasing Reality: Strife Over Realism. University of Toronto Press, Toronto (2006)
Bunge, M.A.: Treatise on Basic Philosophy: Ontology II: A World of Systems. Reidel Publishing Company, Boston, MA (1979)
Becker, M.A., Jordan, N., Larsen, R.: Predictors of successful permanency planning and length of stay in foster care: the role of race, diagnosis and place of residence. Child Youth Serv. Rev. 29, 1102–1113 (2007)
Lukyanenko, R., Castellanos, A., Parsons, J., Chiarini Tremblay, M., Storey, V.C.: How conceptual modeling can support machine learning: evidence from foster care. In: Cappiello, C., Ruiz, M. (eds.) Special Interest Group in Systems Analysis and Design (SIGSAND), pp. 1–11. New York, NY, USA (2019)
Castellanos, A., Castillo, A., Tremblay, M.C., Lukyanenko, R., Parsons, J., Storey, V.C.: Improving machine learning performance using conceptual modeling. In: AAAI Symposium on Combining Machine Learning and Knowledge Engineering in Practice, pp. 1–4. Stanford, CA (2021)
Chen, P.: The entity-relationship model - toward a unified view of data. ACM Trans. Database Syst. 1, 9–36 (1976)
Lukyanenko, R., Parsons, J., Samuel, B.M.: Representing instances: the case for reengineering conceptual modeling grammars. Eur. J. Inf. Syst. 28, 68–90 (2019). https://doi.org/10.1080/0960085X.2018.1488567
Eriksson, O., Johannesson, P., Bergholtz, M.: The case for classes and instances-a response to representing instances: the case for reengineering conceptual modelling grammars. Eur. J. Inf. Syst. 28, 681–693 (2019)
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Lukyanenko, R., Storey, V.C., Pastor, O. (2021). The Notion of “System” as a Core Conceptual Modeling Construct for Life Sciences. In: Reinhartz-Berger, I., Sadiq, S. (eds) Advances in Conceptual Modeling. ER 2021. Lecture Notes in Computer Science(), vol 13012. Springer, Cham. https://doi.org/10.1007/978-3-030-88358-4_8
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DOI: https://doi.org/10.1007/978-3-030-88358-4_8
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