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Self-supervised Learning Based on a Pre-trained Method for the Subtype Classification of Spinal Tumors

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Computational Mathematics Modeling in Cancer Analysis (CMMCA 2022)

Abstract

Spinal tumors contain multiple pathological subtypes, and different subtypes may correspond to different treatments and prognoses. Diagnosis of spinal tumor subtypes from medical images in the early stage is of great clinical significance. Due to the complex morphology and high heterogeneity of spinal tumors, it can be challenging to diagnose subtypes from medical images accurately. In recent years, a number of researchers have applied deep learning technology to medical image analysis. However, such research usually requires a large number of labeled samples for training, which can be difficult to obtain. Therefore, the use of unlabeled medical images to improve the identification performance of models is a hot research topic. This study proposed a self-supervised learning based pre-trained method Res-MAE using a convolutional neural network and masked autoencoder. First, this method trains an efficient feature encoder using a large amount of unlabeled spinal medical data with an image reconstruction task. Then this encoder is transferred to the downstream subtype classification in a multi-modal fusion model for fine-tuning. This multi-modal fusion model adopts a bipartite graph and multi-branch for spinal tumor subtype classification. The experimental results show that the accuracy of the proposed method can be increased by up to 10.3%, and the F1 can be increased by up to 13.8% compared with the baseline method.

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References

  1. Shrivastava, R.K., Epstein, F.J., Perin, N.I., et al.: Intramedullary spinal cord tumors in patients older than 50 years of age: management and outcome analysis. J. Neurosurg. Spine 2(3), 249–255 (2005)

    Article  Google Scholar 

  2. Huang, Z., et al.: Universal semi-supervised learning. Adv. Neural Inf. Process. Syst. 34, 26714–26725 (2021)

    Google Scholar 

  3. Chowdhury, A., et al.: Applying self-supervised learning to medicine: review of the state of the art and medical implementations. In: Informatics, vol. 8, no. 3. MDPI (2021)

    Google Scholar 

  4. Liu, Q., Yu, L., Luo, L., et al.: Semi-supervised medical image classification with relation-driven self-ensembling model. IEEE Trans. Med. Imaging 39(11), 3429–3440 (2020)

    Article  Google Scholar 

  5. Tseng, K.K., Zhang, R., Chen, C.M., et al.: DNetUNet: a semi-supervised CNN of medical image segmentation for super-computing AI service. J. Supercomput. 77(4), 3594–3615 (2021)

    Article  Google Scholar 

  6. Ronneberger, O., Fischer, P., Brox, T.: U-net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

    Chapter  Google Scholar 

  7. Valverde, J.M., et al.: Transfer learning in magnetic resonance brain imaging: a systematic review. J. Imaging 7(4), 66 (2021)

    Article  Google Scholar 

  8. Dosovitskiy, A., Beyer, L., Kolesnikov, A., et al.: An image is worth 16x16 words: transformers for image recognition at scale. arXiv preprint arXiv:2010.11929 (2020)

  9. Vaswani, A., et al.: Attention is all you need. Adv. Neural Inf. Process. Syst. 30, 6000–6010 (2017)

    Google Scholar 

  10. He, K., Chen, X., Xie, S., et al.: Masked autoencoders are scalable vision learners. arXiv preprint arXiv:2111.06377 (2021)

  11. Russakovsky, O., et al.: Imagenet large scale visual recognition challenge. Int. J. Comput. Vis. 115(3), 211–252 (2015)

    Article  MathSciNet  Google Scholar 

  12. Song, X., et al.: Cross-modal attention for mri and ultrasound volume registration. In: de Bruijne, M., et al. (eds.) MICCAI 2021. LNCS, vol. 12904, pp. 66–75. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-87202-1_7

    Chapter  Google Scholar 

  13. Zhou, T., et al.: Deep multi-modal latent representation learning for automated dementia diagnosis. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11767, pp. 629–638. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32251-9_69

    Chapter  Google Scholar 

  14. Zhang, Y., et al.: Modality-aware mutual learning for multi-modal medical image segmentation. In: de Bruijne, M., et al. (eds.) MICCAI 2021. LNCS, vol. 12901, pp. 589–599. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-87193-2_56

    Chapter  Google Scholar 

  15. Zhang, Y., et al.: Multi-phase liver tumor segmentation with spatial aggregation and uncertain region inpainting. In: de Bruijne, M., et al. (eds.) MICCAI 2021. LNCS, vol. 12901, pp. 68–77. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-87193-2_7

    Chapter  Google Scholar 

  16. Syazwany, N.S., Nam, J.-H., Lee, S.-C.: MM-BiFPN: multi-modality fusion network with Bi-FPN for MRI brain tumor segmentation. IEEE Access 9, 160708–160720 (2021)

    Article  Google Scholar 

Download references

Acknowledgement

This work was supported by the Beijing Natural Science Foundation (Z190020), National Natural Science Foundation of China (82171927, 81971578), Capital's Funds for Health Improvement and Research (2020-4-40916).

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Correspondence to Hong Liu .

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Jiao, M. et al. (2022). Self-supervised Learning Based on a Pre-trained Method for the Subtype Classification of Spinal Tumors. In: Qin, W., Zaki, N., Zhang, F., Wu, J., Yang, F. (eds) Computational Mathematics Modeling in Cancer Analysis. CMMCA 2022. Lecture Notes in Computer Science, vol 13574. Springer, Cham. https://doi.org/10.1007/978-3-031-17266-3_6

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  • DOI: https://doi.org/10.1007/978-3-031-17266-3_6

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  • Online ISBN: 978-3-031-17266-3

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