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Automated 3D Segmentation of Renal Structures for Renal Cancer Treatment

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Lesion Segmentation in Surgical and Diagnostic Applications (CuRIOUS 2022, KiPA 2022, MELA 2022)

Abstract

The KiPA 2022 challenge aims to develop reliable and reproducible methods for segmenting four kidney-related structures on CTA images to improve surgery-based renal cancer treatment. In this work, we describe our approach for 3D segmentation of renal vein, kidney, renal artery, and tumor from the KiPA 2022 dataset. We used the MONAI framework and the SegResNet architecture with a combination of Dice Focal loss and L2 regularization. We applied various data augmentation techniques and trained the model using the AdamW optimizer with a Cosine annealing scheduler. Our method achieved \(10^{th}\) position in the open test leaderboard and \(6^{th}\) position in the closed test leaderboard.

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Notes

  1. 1.

    https://github.com/Project-MONAI/MONAI.

References

  1. Kipa 2022. https://kipa22.grand-challenge.org/dataset/

  2. Project-monai/monai. https://doi.org/10.5281/zenodo.5083813

  3. He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)

    Google Scholar 

  4. Ioffe, S., Szegedy, C.: Batch normalization: accelerating deep network training by reducing internal covariate shift. In: International Conference on Machine Learning, pp. 448–456. PMLR (2015)

    Google Scholar 

  5. Myronenko, A.: 3D MRI brain tumor segmentation using autoencoder regularization. In: Crimi, A., Bakas, S., Kuijf, H., Keyvan, F., Reyes, M., van Walsum, T. (eds.) BrainLes 2018. LNCS, vol. 11384, pp. 311–320. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-11726-9_28

    Chapter  Google Scholar 

  6. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

    Chapter  Google Scholar 

  7. Zhou, Z., Rahman Siddiquee, M.M., Tajbakhsh, N., Liang, J.: UNet++: a nested U-Net architecture for medical image segmentation. In: Stoyanov, D., et al. (eds.) DLMIA/ML-CDS -2018. LNCS, vol. 11045, pp. 3–11. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00889-5_1

    Chapter  Google Scholar 

  8. Zhou, Z., Siddiquee, M.M.R., Tajbakhsh, N., Liang, J.: Unet++: redesigning skip connections to exploit multiscale features in image segmentation. IEEE Trans. Med. Imaging 39(6), 1856–1867 (2019)

    Article  Google Scholar 

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Correspondence to Andriy Myronenko .

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Siddiquee, M.M.R., Yang, D., He, Y., Xu, D., Myronenko, A. (2023). Automated 3D Segmentation of Renal Structures for Renal Cancer Treatment. In: Xiao, Y., Yang, G., Song, S. (eds) Lesion Segmentation in Surgical and Diagnostic Applications. CuRIOUS KiPA MELA 2022 2022 2022. Lecture Notes in Computer Science, vol 13648. Springer, Cham. https://doi.org/10.1007/978-3-031-27324-7_5

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  • DOI: https://doi.org/10.1007/978-3-031-27324-7_5

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-27323-0

  • Online ISBN: 978-3-031-27324-7

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