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Segmentation of Intraoperative 3D Ultrasound Images Using a Pyramidal Blur-Pooled 2D U-Net

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Lesion Segmentation in Surgical and Diagnostic Applications (CuRIOUS 2022, KiPA 2022, MELA 2022)

Abstract

Automatic localization and segmentation of the tumor and resection cavity in intraoperative ultrasound images can assist in accurate navigation during image-guided surgery. In this study, we benchmark a pyramidal blur-pooled 2D U-Net as a baseline method to segment the tumor and resection cavity before, during, and after resection in 3D intraoperative ultrasound images. Slicing the 3D image along three transverse, sagittal, and coronal axes, we train a different model corresponding to each axis and average three predicted masks to obtain the final prediction. It is demonstrated that the averaged mask consistently achieves a Dice score greater than or equal to each individual mask predicted by only one model along one axis.

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References

  1. Dixon, L., Lim, A., Grech-Sollars, M., Nandi, D., Camp, S.: Intraoperative ultrasound in brain tumor surgery: A review and implementation guide. Neurosurg. Rev. 45(4), 2503–2515 (2022)

    Article  Google Scholar 

  2. Xiao, Y., Fortin, M., Unsgärd, G., Rivaz, H., Reinertsen, I.: REtroSpective Evaluation of Cerebral Tumors (RESECT): A clinical database of pre-operative MRI and intra-operative ultrasound in low-grade glioma surgeries: A. Med. Phys. 44(7), 3875–3882 (2017)

    Article  Google Scholar 

  3. Behboodi, B., et al.: RESECT-SEG: Open access annotations of intra-operative brain tumor ultrasound images. (2022)

    Google Scholar 

  4. Ronneberger, O., Fischer, P., Brox, T.: U-net: Convolutional networks for biomedical image segmentation. Lect. Notes Comput. Sci. 9351, 234–241 (2015)

    Article  Google Scholar 

  5. Sharifzadeh, M., Benali, H., Rivaz, H.: Investigating Shift Variance of Convolutional Neural Networks in Ultrasound Image Segmentation. IEEE Trans. Ultrason. Ferroelectr. Freq. Control 69(5), 1703–1713 (2022)

    Article  Google Scholar 

  6. Sharifzadeh, M., Benali, H., Rivaz, H.: Shift-Invariant Segmentation in Breast Ultrasound Images. IEEE International Ultrasonics Symposium, IUS (2021)

    Book  Google Scholar 

  7. Abraham, N., Khan, N.M.: A novel focal Tversky loss function with improved attention u-net for lesion segmentation. In: Proceedings - International Symposium on Biomedical Imaging, (ISBI), pp. 683–687 (2019)

    Google Scholar 

  8. Loshchilov, I., Hutter, F.: Decoupled weight decay regularization. In: 7th International Conference on Learning Representations, ICLR (2019)

    Google Scholar 

  9. Adam Paszke, A.: PyTorch: an imperative style, high-performance deep learning library. In Adv. Neural Inf. Proc. Syst. 32 (2019)

    Google Scholar 

  10. Carton, F.-X., Chabanas, M., Le Lann, F., Noble, J.H.: Automatic segmentation of brain tumor resections in intraoperative ultrasound images using U-Net. J. Med. Imaging 7(03), 1 (2020)

    Article  Google Scholar 

  11. Carton, F.-X., Noble, J.H., Chabanas, M.: Automatic segmentation of brain tumor resections in intraoperative ultrasound images. In Fei, B., Linte, C.A., eds, Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling. Society of Photo-Optical Instrumentation Engineers(SPIE) 7, p. 104 (2019)

    Google Scholar 

  12. Sharifzadeh, M., Benali, H., Rivaz, H.: An Ultra-Fast Method for Simulation of Realistic Ultrasound Images. IEEE International Ultrasonics Symposium, IUS (2021)

    Book  Google Scholar 

  13. Sharifzadeh, M., Tehrani, A.K.Z., Benali, H., Rivaz, H.: Ultrasound Domain Adaptation Using Frequency Domain Analysis. In: IEEE International Ultrasonics Symposium (IUS), pp. 1–4(2021)

    Google Scholar 

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Acknowledgements

We acknowledge the support of the Natural Sciences and Engineering Research Council of Canada (NSERC).

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Correspondence to Mostafa Sharifzadeh .

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Sharifzadeh, M., Benali, H., Rivaz, H. (2023). Segmentation of Intraoperative 3D Ultrasound Images Using a Pyramidal Blur-Pooled 2D U-Net. In: Xiao, Y., Yang, G., Song, S. (eds) Lesion Segmentation in Surgical and Diagnostic Applications. CuRIOUS KiPA MELA 2022 2022 2022. Lecture Notes in Computer Science, vol 13648. Springer, Cham. https://doi.org/10.1007/978-3-031-27324-7_9

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  • DOI: https://doi.org/10.1007/978-3-031-27324-7_9

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-27323-0

  • Online ISBN: 978-3-031-27324-7

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